PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016496208.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 213aa MW: 24300.1 Da PI: 5.8834

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016496208.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	84.5	1.1e-26	27	81	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr rWt + H++Fveav++LGG+ +AtPk+i++lm+ +++t h+kSHLQkYR XP_016496208.1 27 KPRFRWTVKHHDHFVEAVNELGGPFEATPKNIMKLMDDDDITSGHIKSHLQKYRQ 81 79****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.45E-14	26	82	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-24	26	82	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.2E-21	27	82	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MGESGKEQKG EETSEKPVVP SHDLNRKPRF RWTVKHHDHF VEAVNELGGP FEATPKNIMK 60 LMDDDDITSG HIKSHLQKYR QSKDIISTPK TSKVKRSEKN EAAVHMLHDK GEMQMIRKTL 120 NTEIDMQGRS NMSLEITNEA EQKENLEAEE IVRQEMQADA TTSWIELQTK EGGSKLKTYS 180 DQSEGSKKNI SKFFTSEKEQ LDLNFPAAAP DQE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-13	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-13	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-13	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-13	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-13	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-13	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-13	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-13	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009605090.1	1e-157	PREDICTED: protein PHOSPHATE STARVATION RESPONSE 3-like isoform X1
Refseq	XP_009605091.1	1e-157	PREDICTED: protein PHOSPHATE STARVATION RESPONSE 3-like isoform X1
Refseq	XP_009605092.1	1e-157	PREDICTED: protein PHOSPHATE STARVATION RESPONSE 3-like isoform X1
Refseq	XP_016496207.1	1e-157	PREDICTED: protein PHR1-LIKE 1-like
Refseq	XP_016496208.1	1e-157	PREDICTED: protein PHR1-LIKE 1-like
Refseq	XP_016496209.1	1e-157	PREDICTED: protein PHR1-LIKE 1-like
TrEMBL	A0A1S4C4X0	1e-156	A0A1S4C4X0_TOBAC; protein PHR1-LIKE 1-like
STRING	XP_009605090.1	1e-157	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	2e-18	myb-related protein 1