PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496200.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 274aa    MW: 30850.7 Da    PI: 6.9772
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496200.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-2065114255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a+++a++k++g
  XP_016496200.1  65 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAALAYDEAALKFKG 114
                     7********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.4E-3364123IPR001471AP2/ERF domain
SMARTSM003801.3E-3865128IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2265123IPR016177DNA-binding domain
PROSITE profilePS5103225.01465122IPR001471AP2/ERF domain
PfamPF008472.3E-1465114IPR001471AP2/ERF domain
CDDcd000183.54E-2165123No hitNo description
PRINTSPR003671.4E-116677IPR001471AP2/ERF domain
PRINTSPR003671.4E-1188104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSAMVSVLSQ VIGNTNNNNN TTNISSVNSS VHGINPLTLP QSTGANLQNQ SQSIQEQGNQ  60
QRKRHYRGVR QRPWGKWAAE IRDPKKAARV WLGTFDTAEA AALAYDEAAL KFKGNKAKLN  120
FPERVQGKTE FSFLTNTTQE FGIVGQQFSA TSSNNNNNNH NINLPYFQPN YLSQEHFPNV  180
HHYAQLLRDG NNFEMNFGVS PNFYQPISEG FVSESLPNTS LALQQGTSHE QEQEVGYNQK  240
EEDFLRFPFH FGNSNSSAGP NTGESNWEDF ERRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2764125163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016496200.10.0PREDICTED: ethylene-responsive transcription factor ERF113-like
TrEMBLA0A1S4C4Y00.0A0A1S4C4Y0_TOBAC; ethylene-responsive transcription factor ERF113-like
STRINGXP_009586804.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.19e-32related to AP2 6l