PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496187.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 295aa    MW: 32468.2 Da    PI: 7.9965
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496187.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.67.8e-101158347
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                      W+ eE++ + +a++ +  +    +W +Ia++++  +t +++k ++q +
   XP_016496187.1 11 MWSREEEKAFENAIAIHWIEdsklQWQKIASMVP-SKTIEELKQHYQLL 58
                     5*****************99**************.***********965 PP

2Myb_DNA-binding38.33.1e-12134178347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r     Rt+ q+ s+ qky
   XP_016496187.1 134 PWTEEEHRLFLLGLDKFGKGDWRSISRNYVISRTPTQVASHAQKY 178
                      7*****************************89************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.813762IPR017884SANT domain
SMARTSM007171.3E-4861IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-41158IPR009057Homeodomain-like
CDDcd001679.23E-91259No hitNo description
PfamPF002491.1E-61257IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-91266IPR009057Homeodomain-like
PROSITE profilePS5129416.887127183IPR017930Myb domain
SuperFamilySSF466898.61E-17129184IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-17131181IPR006447Myb domain, plants
SMARTSM007174.7E-10131181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-10132177IPR009057Homeodomain-like
CDDcd001671.31E-9134179No hitNo description
PfamPF002499.7E-11134178IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSTSTSTSSL MWSREEEKAF ENAIAIHWIE DSKLQWQKIA SMVPSKTIEE LKQHYQLLVD  60
DVTDIEAGNV PIPIYTGEET SSSTKDSSHG YSGISTGRSN CGYVNGFSAS VHDQIGQGGK  120
ASSKSEQERR KGIPWTEEEH RLFLLGLDKF GKGDWRSISR NYVISRTPTQ VASHAQKYFI  180
RLNSMNRDRR RSSIHDITSV NNGEVATNQT PITGQQTNPS PSNAVGPNVG QRNQPNMHGL  240
SMYGAPMGHP VAAPPGHHVS AVGTPVMLPP GHHPPYVLPV GYHMPPHPLP PMHHQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762003.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_016496187.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN67e-82SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A1S4C4V40.0A0A1S4C4V4_TOBAC; transcription factor DIVARICATA-like
TrEMBLA0A1U7V6I80.0A0A1U7V6I8_NICSY; transcription factor DIVARICATA-like
STRINGXP_009762003.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58012136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.18e-78MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]