PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016496187.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 295aa MW: 32468.2 Da PI: 7.9965 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.6 | 7.8e-10 | 11 | 58 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 W+ eE++ + +a++ + + +W +Ia++++ +t +++k ++q + XP_016496187.1 11 MWSREEEKAFENAIAIHWIEdsklQWQKIASMVP-SKTIEELKQHYQLL 58 5*****************99**************.***********965 PP | |||||||
2 | Myb_DNA-binding | 38.3 | 3.1e-12 | 134 | 178 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r Rt+ q+ s+ qky XP_016496187.1 134 PWTEEEHRLFLLGLDKFGKGDWRSISRNYVISRTPTQVASHAQKY 178 7*****************************89************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.813 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 1.3E-4 | 8 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-4 | 11 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.23E-9 | 12 | 59 | No hit | No description |
Pfam | PF00249 | 1.1E-6 | 12 | 57 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.79E-9 | 12 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.887 | 127 | 183 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-17 | 129 | 184 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.2E-17 | 131 | 181 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.7E-10 | 131 | 181 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-10 | 132 | 177 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.31E-9 | 134 | 179 | No hit | No description |
Pfam | PF00249 | 9.7E-11 | 134 | 178 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MSTSTSTSSL MWSREEEKAF ENAIAIHWIE DSKLQWQKIA SMVPSKTIEE LKQHYQLLVD 60 DVTDIEAGNV PIPIYTGEET SSSTKDSSHG YSGISTGRSN CGYVNGFSAS VHDQIGQGGK 120 ASSKSEQERR KGIPWTEEEH RLFLLGLDKF GKGDWRSISR NYVISRTPTQ VASHAQKYFI 180 RLNSMNRDRR RSSIHDITSV NNGEVATNQT PITGQQTNPS PSNAVGPNVG QRNQPNMHGL 240 SMYGAPMGHP VAAPPGHHVS AVGTPVMLPP GHHPPYVLPV GYHMPPHPLP PMHHQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009762003.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_016496187.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q9FNN6 | 7e-82 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A1S4C4V4 | 0.0 | A0A1S4C4V4_TOBAC; transcription factor DIVARICATA-like | ||||
TrEMBL | A0A1U7V6I8 | 0.0 | A0A1U7V6I8_NICSY; transcription factor DIVARICATA-like | ||||
STRING | XP_009762003.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5801 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49010.1 | 8e-78 | MYB family protein |
Publications ? help Back to Top | |||
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