PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496172.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 396aa    MW: 45023.9 Da    PI: 6.2938
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496172.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.93.4e-31212266155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWt+ LH+rFve+v++LGG++kAtPk+i++lm+ +gLt+ hvkSHLQkYR+
  XP_016496172.1 212 KTRIRWTQHLHDRFVECVNRLGGADKATPKAIVKLMDSEGLTIFHVKSHLQKYRS 266
                     68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-28210267IPR009057Homeodomain-like
SuperFamilySSF466893.94E-16211266IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-23212267IPR006447Myb domain, plants
PfamPF002491.2E-6216265IPR001005SANT/Myb domain
PfamPF143798.9E-21296343IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MSIQRAEQTH AYHNSEFATD CNLEFQQNID QQKSTSCLEF CFQPGTSAEN CCQQVSWPNT  60
DSTSRTIISR IGSPASAFFA TERLIQYEYQ DNSCQLSKYN DPQLPSYPQR DFPKISMPSF  120
IRSQLSSSQP LGAYGNPFSN LSEKERLAIL KSKLLEEFDT SNKQPSMPVF HGNQDYGLSN  180
NFSGFNLEHA RQQSESSSPN NVNNSGGSLS NKTRIRWTQH LHDRFVECVN RLGGADKATP  240
KAIVKLMDSE GLTIFHVKSH LQKYRSAKYI PESAEGKSEK IDSPNNVTQI NSKTGMQIKE  300
ALNMQLEVQR RLHEQLEIQR KLQMRIEEQG EQLKKMFDQQ QKTTRSLLET RNSSITSPVD  360
SFTPHEEEDE VHVADSFDNT NFSSKITYDD MANASI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-22212269259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-22212269259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-22212269259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-22212269259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-22212269259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-22212269259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-22212269259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-22212269259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016496172.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X2
TrEMBLA0A1S4C4U20.0A0A1S4C4U2_TOBAC; protein PHR1-LIKE 1-like isoform X2
STRINGXP_009765655.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.14e-67G2-like family protein