PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496170.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 397aa    MW: 45152 Da    PI: 6.2938
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496170.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.93.4e-31213267155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWt+ LH+rFve+v++LGG++kAtPk+i++lm+ +gLt+ hvkSHLQkYR+
  XP_016496170.1 213 KTRIRWTQHLHDRFVECVNRLGGADKATPKAIVKLMDSEGLTIFHVKSHLQKYRS 267
                     68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-28211268IPR009057Homeodomain-like
SuperFamilySSF466893.94E-16212267IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-23213268IPR006447Myb domain, plants
PfamPF002491.2E-6217266IPR001005SANT/Myb domain
PfamPF143799.0E-21297344IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSIQRAEQTH AYHNSEFATD CNLEFQQNID QQKSTSCLEF CFQPGTSAEN CCQQVSWPNT  60
DSTSRTIISR IGSPASAFFA TERLIQYEYQ DNSCQLSKYN DPQLPSYPQR DFPKISMPSF  120
IRSQLSSSQP LGAYGNPFSN LSEKERLAIL KSKLLEEFDT SNKQPSMPVF HGNQDYGQLS  180
NNFSGFNLEH ARQQSESSSP NNVNNSGGSL SNKTRIRWTQ HLHDRFVECV NRLGGADKAT  240
PKAIVKLMDS EGLTIFHVKS HLQKYRSAKY IPESAEGKSE KIDSPNNVTQ INSKTGMQIK  300
EALNMQLEVQ RRLHEQLEIQ RKLQMRIEEQ GEQLKKMFDQ QQKTTRSLLE TRNSSITSPV  360
DSFTPHEEED EVHVADSFDN TNFSSKITYD DMANASI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-22213270259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-22213270259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-22213270259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-22213270259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-22213270259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-22213270259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-22213270259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-22213270259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016496170.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
TrEMBLA0A1S4C4V60.0A0A1S4C4V6_TOBAC; protein PHR1-LIKE 1-like isoform X1
STRINGXP_009765655.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24912458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.14e-67G2-like family protein