PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496035.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 322aa    MW: 35388 Da    PI: 10.1444
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496035.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA88.31e-27154208258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      p++VNaKQy++Il+RR++Rak  e kk   k rkpylh SRh hA+rRpRg+gGrF
  XP_016496035.1 154 GPIFVNAKQYHGILRRRKSRAKEME-KKA-LKPRKPYLHLSRHLHAMRRPRGCGGRF 208
                     69*******************9666.555.6*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.9E-30151211IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115231.964152211IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-23155208IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.3E-21155177IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.3E-21185208IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTIMHTLFSS KGNEGIVQNP VATLSTTVPW WSSGLVSQSS SAEHSELPKG NATEFTIFSV  60
SPSGDWKSSG YGQNQSNIQA VANMDYRGQF ELGFGQSLIS AKYPYGGEQS VGLFSAYGPQ  120
LSRNVQNSTV NGAQTLYVNM GRVMLPLNLA SDEGPIFVNA KQYHGILRRR KSRAKEMEKK  180
ALKPRKPYLH LSRHLHAMRR PRGCGGRFLN TRKMNGTMKG GKTTDTVKTG DVYSFYPIGS  240
QNSEVLQSDS SNLSSPKETT GSRLCHSSEV TNMYSRRNLD PFPFQDLRPS VQPIPDMMNT  300
GHGILMAGKW VSAADSCCNL KV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A4e-16153209260HAPB protein
4g92_A4e-16153209260HAPB protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4897581e-174AM489758.1 Petunia x hybrida partial mRNA for YA1 (nf-YA gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016496034.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1
RefseqXP_016496035.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1
TrEMBLA0A1S4C4N90.0A0A1S4C4N9_TOBAC; nuclear transcription factor Y subunit A-10-like isoform X1
STRINGXP_009608878.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.24e-38nuclear factor Y, subunit A10