PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495982.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family DBB
Protein Properties Length: 383aa    MW: 42805.7 Da    PI: 5.0586
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495982.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box231.6e-071659239
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    + r C+ ++e+ + l+C+ ++  lC +C  e H+       Ht+
  XP_016495982.1 16 QRRLCDFCGENTALLYCRADSAKLCFSCDREVHSTnqlftkHTR 59
                    6789*****************************66778888875 PP
2zf-B_box20.97.7e-0762104542
        zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      C+ +++ ++++ C ++++ +C++C  e+H +      H+++pl
  XP_016495982.1  62 LCDSCDSSPASILCCTDSCVFCQNCDWESH-NlslspaHERRPL 104
                     6*****************************.6688999988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-131562IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0681562IPR000315B-box-type zinc finger
PfamPF006436.6E-61759IPR000315B-box-type zinc finger
CDDcd000212.31E-71859No hitNo description
PROSITE profilePS501199.65558104IPR000315B-box-type zinc finger
CDDcd000219.55E-562104No hitNo description
SMARTSM003360.4663104IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MTELKEDQED QNQQPQRRLC DFCGENTALL YCRADSAKLC FSCDREVHST NQLFTKHTRW  60
LLCDSCDSSP ASILCCTDSC VFCQNCDWES HNLSLSPAHE RRPLEGFTGC PCVSELLSIL  120
GFEDLGKKAL SYGDSVTSDG GGYGFSDWLV WDTPSVVSLD DLIAPNDSAH NFQAIGVPPL  180
PKNRNAACGK HKEEILSQLR ELSKLEPNSS DDQDDIVAFQ FMEPAQNRHL GFKGSGFMQN  240
SEHAVVPSSE GSAFNWCSDT GEFTDQGFSS SLADCFIETK CLLPDRDSDV GDASGGANEE  300
QSHNPSIAET FQMVPKVAHR ELNSQERETA VSRYKEKKKT RRYRHSLFHS VFSPFKFQVC  360
GVSVYRPPVM FKSKYSKFLI AIF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016495982.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like isoform X1
TrEMBLA0A1S4C4A50.0A0A1S4C4A5_TOBAC; zinc finger protein CONSTANS-LIKE 13-like isoform X1
STRINGXP_009791542.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.25e-69B-box type zinc finger protein with CCT domain