PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495887.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 654aa    MW: 71278.2 Da    PI: 6.7317
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495887.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.62.9e-28209262155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  XP_016495887.1 209 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 262
                     79*******************.********************************8 PP
2Response_reg76.97e-26251331109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+ + +++l+q+l+k +y +v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll+     e++lp+i++++ g  +++ + ++ G
  XP_016495887.1  25 VLVVDDDIVCLRILEQMLRKCKY-SVTTCTQATVALNLLRERRgsFDVVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSGDGRTNLVMRGVQHG 117
                     89*********************.***************999999*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+  eel +
  XP_016495887.1 118 ACDYLIKPIRDEELKN 133
                     *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.3E-4122166No hitNo description
SuperFamilySSF521722.13E-3522147IPR011006CheY-like superfamily
SMARTSM004487.4E-3023135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.80624139IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.1E-2325133IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.71E-2726138No hitNo description
SuperFamilySSF466891.43E-19206266IPR009057Homeodomain-like
PROSITE profilePS5129411.006206265IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-29207267IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-24209262IPR006447Myb domain, plants
PfamPF002499.4E-7211260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MASMSGDGAT CKSEATDTFP VGLRVLVVDD DIVCLRILEQ MLRKCKYSVT TCTQATVALN  60
LLRERRGSFD VVLSDVHMPD MDGFKLLELV GLEMDLPVIM MSGDGRTNLV MRGVQHGACD  120
YLIKPIRDEE LKNIWQHVVR KKCSFSKEPE YSGSLDDNDR HKRGNDDAEC ASSVIEGADR  180
VLKPQKKKRD AKEEDEMEME NDDPTTAKKP RVVWSVELHQ QFVSAVNQLG IDKAVPKRIL  240
ELMNVPGLTR ENVASHLQKF RLYLKRLSGV AQQQGGFPST YCGPIEQNPK LGSLGRFDIQ  300
ALAASGQIPP ETLTALHAEL LGRSSGNLVL PSVEQPDLLQ ASLQQAKCIP VDHVVAYGQP  360
LMKCPPSITN PKLLSQPTMS AEDVHSGFGS WRAKNICMVP SSNLTGLAAP DSNMLMAMMQ  420
HQQQWQKQQQ LEQQQKQSGL SEANHSINVK PSCLVLPSQS PGNFQVGDSP GSISQACSLS  480
KSSIIDYRVL SPQSNNSSAV VQVLDRELKP ACGLNRLSTA ASFTPLVSAC SVHADNSVGL  540
QLHNSSSAFG ASKQLPGFVP NHLGFPVSCY SKPSQILDQG PTRNPGVGKA ASIPSRFAVD  600
ESDSPMCNFS TAKVYTEDTK VKQEPNMNIM ENAKVGPALF QNFPSGDLMS VFSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-23205268164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF4125410.0JF412541.1 Nicotiana tabacum RRB1 type-b response regulator mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776287.10.0PREDICTED: uncharacterized protein LOC104226094 isoform X2
SwissprotA2XE311e-148ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-148ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A1S4C4020.0A0A1S4C402_TOBAC; two-component response regulator ORR21-like isoform X2
TrEMBLA0A1U7W8F20.0A0A1U7W8F2_NICSY; uncharacterized protein LOC104226094 isoform X2
STRINGXP_009776286.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-112response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]