PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495741.1
Common NameNtERF3b
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 227aa    MW: 24648.6 Da    PI: 8.4538
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495741.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.17.1e-212675255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAaka++ a+++++g
  XP_016495741.1 26 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDTAAREFRG 75
                    6********.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.0E-412689IPR001471AP2/ERF domain
PROSITE profilePS5103224.1572683IPR001471AP2/ERF domain
PfamPF008475.8E-142675IPR001471AP2/ERF domain
CDDcd000187.72E-322683No hitNo description
Gene3DG3DSA:3.30.730.106.7E-332683IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-222684IPR016177DNA-binding domain
PRINTSPR003672.4E-112738IPR001471AP2/ERF domain
PRINTSPR003672.4E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAVKNKVSNG DLKGGNVKTN GVKEVHYRGV RKRPWGRYAA EIRDPGKKSR VWLGTFDTAE  60
EAAKAYDTAA REFRGPKAKT NFPLPSENQS TSHSSTMESS SGETGIHAPP HAPLELDLTR  120
RLGSVAADGG DHCRRSGEVG YPIFHQQPTV AVLPNGQPVL LFDSLWRPGV VNRPQPYHVM  180
PMAMGFNGVN AGVDPTVSDS SSVVEENQYD GKRGIDLDLN LAPPTEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-222684261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-222284164ATERF1
3gcc_A4e-222284164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5737160.0AB573716.1 Nicotiana tabacum NtERF3b mRNA for ethylene response factor 3b, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312862.11e-169ethylene-responsive transcription factor 4
SwissprotQ9LW491e-169ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLE7FKW01e-168E7FKW0_TOBAC; Ethylene response factor 3b
STRINGXP_009772525.11e-167(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-28erf domain protein 9