PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016495551.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 379aa MW: 42529.9 Da PI: 6.5254

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016495551.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.4e-32	243	298	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGG+++AtPk+i+e+m+v+gLt+++vkSHLQk+Rl+ XP_016495551.1 243 KQRRCWSPELHRRFVDALHQLGGPQVATPKQIREIMQVDGLTNDEVKSHLQKFRLH 298 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.327	240	300	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-29	240	301	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.18E-17	241	301	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-26	243	298	IPR006447	Myb domain, plants
Pfam	PF00249	4.0E-7	245	295	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MGSSSKELNL DLNCVYVPKI ISDVLTEVSA IDDISKKLSK LNHFVLSLEE ELRKIEAFKR 60 ELPLCMVLLK DAIERLKEEA LQYKGKGKRP VMEEFIPLKS NSNESGRVKM SNDISDKKKW 120 MSSAQLWSTP VHYESIDLGK QGQFLQLKSS GAEGRERENE YELGIYKLKN DRGAFMPFQE 180 NSVRSVKDEK NGKPVNDLSL CMAVGEREEG PNPVDVSVKI DNGGGRSNGC SSNFLQDKSQ 240 QRKQRRCWSP ELHRRFVDAL HQLGGPQVAT PKQIREIMQV DGLTNDEVKS HLQKFRLHVR 300 RVPVSGCSWS TMDEIGESSK TNATQSGSPE GPLHFTGSGS AKGVSINEGE TMEENEEEDN 360 KSESYTWNGQ IPKSIEAHV

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MGSSSKELNL DLNCVYVPKI ISDVLTEVSA IDDISKKLSK LNHFVLSLEE ELRKIEAFKR  60
ELPLCMVLLK DAIERLKEEA LQYKGKGKRP VMEEFIPLKS NSNESGRVKM SNDISDKKKW  120
MSSAQLWSTP VHYESIDLGK QGQFLQLKSS GAEGRERENE YELGIYKLKN DRGAFMPFQE  180
NSVRSVKDEK NGKPVNDLSL CMAVGEREEG PNPVDVSVKI DNGGGRSNGC SSNFLQDKSQ  240
QRKQRRCWSP ELHRRFVDAL HQLGGPQVAT PKQIREIMQV DGLTNDEVKS HLQKFRLHVR  300
RVPVSGCSWS TMDEIGESSK TNATQSGSPE GPLHFTGSGS AKGVSINEGE TMEENEEEDN  360
KSESYTWNGQ IPKSIEAHV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016495551.1	0.0	PREDICTED: uncharacterized protein LOC107814623
TrEMBL	A0A1S4C302	0.0	A0A1S4C302_TOBAC; uncharacterized protein LOC107814623
STRING	XP_009622698.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8497	22	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	6e-59	G2-like family protein