PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016495504.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 776aa MW: 88371.9 Da PI: 8.7834 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.3 | 5.8e-13 | 18 | 106 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk+ + ++++k+ +p +f+ ++g + + ++le +sg W+vkl +++ g+ +l++GW +F + + g f++F+++g+s f v+ XP_016495504.1 18 FFKIILFPHASKL---HIPDEFVMKYGANMRD--LVSLEVPSGALWKVKL--QNSNGMAWLKEGWDQFKEYYSIGCGYFLLFQYNGNSHF--SVS 103 5666666666665...5*********988655..8***************..**********************************9999..999 PP EE- CS B3 96 vfr 98 +f+ XP_016495504.1 104 IFD 106 987 PP | |||||||
2 | B3 | 56.8 | 3.9e-18 | 659 | 754 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+ + p +v+++ +l +p +f++++ ++ e+ ++l+ ++gr+W+ +++++ + r+ + GW+eF+ +ngLk+ D++vF+l++ e l+++ XP_016495504.1 659 FIVSMQPTHVSRNFLLNIPGNFFRRYFKE--EEAFVILRASDGRTWRARCSFQSNCARI-HSPGWREFALDNGLKVHDTCVFELMEGIELVLNIT 750 67789999******************755..4457****************99998885.577*********************98877778888 PP EE-S CS B3 96 vfrk 99 +fr+ XP_016495504.1 751 IFRA 754 8886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.67E-20 | 15 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.617 | 15 | 108 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-19 | 15 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.58E-15 | 16 | 106 | No hit | No description |
SMART | SM01019 | 1.4E-12 | 18 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-10 | 18 | 106 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.08E-22 | 653 | 757 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-23 | 653 | 757 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.60E-21 | 657 | 753 | No hit | No description |
SMART | SM01019 | 1.1E-14 | 659 | 755 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.592 | 659 | 755 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.5E-17 | 659 | 754 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 776 aa Download sequence Send to blast |
MVKRRRQAVN VAEITPQFFK IILFPHASKL HIPDEFVMKY GANMRDLVSL EVPSGALWKV 60 KLQNSNGMAW LKEGWDQFKE YYSIGCGYFL LFQYNGNSHF SVSIFDLSAS EIEYPSGPSE 120 DMTPENFVKI VGDASHIKKE VGPETNNNAC DDIVDDLLRK KTAKVTKVAD HSYPRRQRSG 180 VPEWQDPIRV NLEKPDVEED LYCATDKEKR KEIKKEKLEK QNMEKNLYHA ADKGKAEHCK 240 EVLDPPASKM TNTSRCNKRK YSTSLEAPHC RHPLRSKSKP VEVVKLDQSK TEGTMHCVKP 300 KNTVVADSSH SGRQKTAAPI SCPETIEPKT KPEKVNLEED FHCAAPKARR GETNMEKLEK 360 QVVQQNVYAE AYKFKEHCNE VPVVDSSASK MTTTNQQSEK KTTINLDASC CRYPLRSKQL 420 KDVMIEKRDL KEHCNEVSVV DLSASKMITT NRHTEKKTAT SLDASWCRYP LRSKQLKDVK 480 IEKRDVEEHC NKLPVMDPSA SEMTTTNQHS GKKTATSLDV SRCRYPLRSK QLKEVKLEQW 540 GGEKNMHNLK PKNKVVADSP YCERQNSGLP ASSPSFHPEK KEPIRVKLEK PDVEEDLFCA 600 AQKAKMKVIN NVKLEIGDVE GNLNSAAYKV KASEMTNTWQ EKGYTLIDAQ CSKLGNPYFI 660 VSMQPTHVSR NFLLNIPGNF FRRYFKEEEA FVILRASDGR TWRARCSFQS NCARIHSPGW 720 REFALDNGLK VHDTCVFELM EGIELVLNIT IFRADSCFLK DNLPLCGQGR DSVTVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-14 | 632 | 755 | 22 | 143 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-14 | 632 | 755 | 22 | 143 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016495504.1 | 0.0 | PREDICTED: uncharacterized protein LOC107814576 isoform X3 | ||||
TrEMBL | A0A1S4C362 | 0.0 | A0A1S4C362_TOBAC; uncharacterized protein LOC107814576 isoform X3 | ||||
STRING | XP_009797235.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-22 | B3 family protein |