PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016495494.1

Common Name

NtabSPL6-3

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 524aa MW: 57202.9 Da PI: 8.8961

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016495494.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.5	7.1e-42	164	239	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC +dls++k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk++ XP_016495494.1 164 CQVLGCGKDLSSCKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPH 239 **************************************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.8E-33	157	225	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.565	161	238	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.57E-38	162	242	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.5E-31	164	237	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MESWSYLSGG KGFISEESVS VNDGMGRTKN GLMGWELKTP SSYVMCSSQE DSTNNQGFPE 60 LGSQNLMKKT MFSDQSIFGS VAASPSAAYS GENKSKSSSK LSSSVVESNS RDSSLIDLKL 120 GRFPDQIDAN VYKSPKIMPN VSGAESIVPA KRMRAGGVSS HPFCQVLGCG KDLSSCKDYH 180 KRHKVCEVHS KTAKVIVNGI EQRFCQQCSR FHLLAEFDDG KRSCRKRLAG HNERRRKPHT 240 GTRFRGTSFA TSSFACQDIL GGRFLHQPKF EMNDWYKNVK VEDGVERSHQ LAMPFSNGQL 300 QPKSVFTSYH AKKQCQPLHD EGQPAVTTSR INESAISSMH DMRGSDFVSP SLFHTSSTGS 360 EVLHVLDTSS TIHGLSGISN SSNALSLLSS QSRGSSNHST VFRAAHPLIS PSNNSRYSVT 420 QASKEVLGFS PQDSTGRMSN TFNSSGVNSA EGGLDQILFP SNTCSVDGIM QGPNFVNQKD 480 QLSCEDGPTI DLLQLSSQLQ RVEHQRLSMQ VKQGSNTFPG LRIT

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MESWSYLSGG KGFISEESVS VNDGMGRTKN GLMGWELKTP SSYVMCSSQE DSTNNQGFPE  60
LGSQNLMKKT MFSDQSIFGS VAASPSAAYS GENKSKSSSK LSSSVVESNS RDSSLIDLKL  120
GRFPDQIDAN VYKSPKIMPN VSGAESIVPA KRMRAGGVSS HPFCQVLGCG KDLSSCKDYH  180
KRHKVCEVHS KTAKVIVNGI EQRFCQQCSR FHLLAEFDDG KRSCRKRLAG HNERRRKPHT  240
GTRFRGTSFA TSSFACQDIL GGRFLHQPKF EMNDWYKNVK VEDGVERSHQ LAMPFSNGQL  300
QPKSVFTSYH AKKQCQPLHD EGQPAVTTSR INESAISSMH DMRGSDFVSP SLFHTSSTGS  360
EVLHVLDTSS TIHGLSGISN SSNALSLLSS QSRGSSNHST VFRAAHPLIS PSNNSRYSVT  420
QASKEVLGFS PQDSTGRMSN TFNSSGVNSA EGGLDQILFP SNTCSVDGIM QGPNFVNQKD  480
QLSCEDGPTI DLLQLSSQLQ RVEHQRLSMQ VKQGSNTFPG LRIT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-29	157	237	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LC073291	0.0	LC073291.1 Nicotiana tabacum NtabSPL6-3 mRNA for squamosa promoter binding protein NtabSPL6-3, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312856.1	0.0	squamosa promoter-binding-like protein 6
Refseq	XP_009758722.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6
Refseq	XP_016495494.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6
TrEMBL	A0A125SZN0	0.0	A0A125SZN0_TOBAC; Squamosa promoter binding protein NtabSPL6-3
TrEMBL	A0A1U7URK2	0.0	A0A1U7URK2_NICSY; squamosa promoter-binding-like protein 6
STRING	XP_009758722.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5187	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	9e-46	SBP family protein

Link Out ? help Back to Top
Entrez Gene	107814567

Publications ? help Back to Top
Han YY,Ma YQ,Li DZ,Yao JW,Xu ZQ Characterization and phylogenetic analysis of fifteen NtabSPL genes in Nicotiana tabacum L. cv. Qinyan95. Dev. Genes Evol., 2016. 226(1): p. 1-14 [PMID:26635304]