PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495220.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 204aa    MW: 23682.4 Da    PI: 7.1504
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495220.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W +eEde lv  v+ lG  +W+ Ia+  g++R++k+c++rw++yl
   XP_016495220.1 14 RGQWLEEEDESLVMIVAILGECRWDDIAKASGLRRSGKSCRLRWLNYL 61
                     899*******************************************97 PP
2Myb_DNA-binding42.91.1e-1370112448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       T++E+ l++++ +q+ ++ W++Ia+ ++ gRt++++k++w+++l
   XP_016495220.1  70 ITADEERLIIQLRRQFVNK-WSKIAKQLP-GRTDNEIKNYWRSHL 112
                      59*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.243961IPR017930Myb domain
SuperFamilySSF466892.49E-2612108IPR009057Homeodomain-like
SMARTSM007171.0E-111363IPR001005SANT/Myb domain
PfamPF002494.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-201568IPR009057Homeodomain-like
CDDcd001672.10E-81761No hitNo description
PROSITE profilePS5129422.90762116IPR017930Myb domain
SMARTSM007171.5E-1366114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2269115IPR009057Homeodomain-like
PfamPF002494.6E-1270112IPR001005SANT/Myb domain
CDDcd001677.98E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MASKQTMQQD ELRRGQWLEE EDESLVMIVA ILGECRWDDI AKASGLRRSG KSCRLRWLNY  60
LRPNLKHGHI TADEERLIIQ LRRQFVNKWS KIAKQLPGRT DNEIKNYWRS HLRKKALINE  120
QESFGSNTSN SEQQSSTLKS DTVPSSHSDD SFSEKGDCSS ADSLSHSSNE TTLLDWIPSW  180
SYEQSRMEHH MYFCSSSLCY CYPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-25511618128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016495219.11e-151PREDICTED: transcription factor MYB48-like
RefseqXP_016495220.11e-151PREDICTED: transcription factor MYB48-like
SwissprotQ9SCP14e-47MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A1S4C2E51e-150A0A1S4C2E5_TOBAC; transcription factor MYB48-like
STRINGXP_009804412.11e-149(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.11e-48myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]