PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495189.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YC
Protein Properties Length: 351aa    MW: 40310.2 Da    PI: 4.482
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495189.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC109.71.7e-3449150299
           NF-YC   2 lksfwekqieka...tdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     l  fw++q+e++   +++k ++elPlari++ +k++++vkm+sa++ vl++ka e+fileltlr+w++ae+ krrtlk+ dia a+ + +  dfl
  XP_016495189.1  49 LLCFWKQQVEETlqaSELKkKQELPLARIRRAIKSNDQVKMVSAHSIVLFAKATEMFILELTLRAWMQAEQVKRRTLKRYDIARAIRNEELLDFL 143
                     568*****886511156665789************************************************************************ PP

           NF-YC  93 vdivprd 99 
                      divp +
  XP_016495189.1 144 CDIVPLQ 150
                     ****976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.19E-2168149IPR009072Histone-fold
PfamPF008083.7E-1370134IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.6E-2772148IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEFPKSSSAL SSEMQKPVGI HSCLPSNNKT QQDEDKREPC FMHLLRAKLL CFWKQQVEET  60
LQASELKKKQ ELPLARIRRA IKSNDQVKMV SAHSIVLFAK ATEMFILELT LRAWMQAEQV  120
KRRTLKRYDI ARAIRNEELL DFLCDIVPLQ SYKFQVEEAN YGQGNEFHPA YQMVQPINFP  180
NLQYQFQVEE EANDGQGNEF HPAYEMLQLQ PNNIPLQYQF QVEEESLDVQ GNEFHQSYQM  240
VQPNNIPQQN QFQVEEEAND GQGNDFLAAY HMVQPNDVPL QYQFQVEEEA NGGEGNQFHQ  300
AYQMVQPNNI PASFTSIQGI PAPLMLPPAI NSSAEAEFSS DGFALDNKEG L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-244614816118HapE
4g92_C2e-244614816118HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016495189.10.0PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X4
TrEMBLA0A1S4C2B50.0A0A1S4C2B5_TOBAC; nuclear transcription factor Y subunit gamma-like isoform X4
STRINGXP_009594862.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-31nuclear factor Y, subunit C4