PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016494411.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 342aa    MW: 37868 Da    PI: 4.6159
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016494411.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK383.2e-12179219444
          RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRW 44 
                     +isl dl+++F ++ +dAA +Lgv++++ Kr CR +G++ W
  XP_016494411.1 179 RISLGDLQQQFGKKRNDAAESLGVSPSTFKRCCRANGLAKW 219
                     699************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS515199.841162250IPR003035RWP-RK domain
PfamPF020424.0E-12180219IPR003035RWP-RK domain
SuperFamilySSF542775.23E-15239328No hitNo description
Gene3DG3DSA:3.10.20.2401.6E-13246328No hitNo description
PROSITE profilePS5174514.35249326IPR000270PB1 domain
SMARTSM006668.1E-12249331IPR000270PB1 domain
PfamPF005647.3E-13249329IPR000270PB1 domain
CDDcd059921.67E-15252328No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGTVLVNLSI FTMLTVVYVA AAKITAEESD FSPSPAPVPA VGMDAGAGFQ LTQSGAFLLF  60
CLILCYLYLT DSLFANPDPD SFAAFADDSD QNLFADIINT SLQEDCFPSE MGLNNQILFG  120
IDVPLTSSVL LHSENRGEIT TDEPLQDKQM QSVHVNEITV LHQNYSQPRD KSKEKDYCRI  180
SLGDLQQQFG KKRNDAAESL GVSPSTFKRC CRANGLAKWS CKLKVQPHTT PTLTQRVVES  240
MATFQSDNTM SLKVSYNGVN VRFPLILSSG KNDLEAEVET RFGIQIGSFS IMYEDEDKDW  300
ILITCDLDLH HGMHILKNKG ITTMKINLVN QIECDRIPNS NA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016494411.10.0PREDICTED: protein NLP5-like isoform X2
TrEMBLA0A1S4BZT70.0A0A1S4BZT7_TOBAC; protein NLP5-like isoform X2
STRINGXP_009770811.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.11e-10Nin-like family protein