PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016494298.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 140aa    MW: 16227.5 Da    PI: 9.8835
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016494298.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-2054104155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++ykGVr++k +g+WvAe+rd      k+ r++lg+f+taeeAa a+++a  +++g
  XP_016494298.1  54 KKYKGVRQRK-WGKWVAEVRDtR----KKNRIWLGTFDTAEEAALAYDKAVIEMRG 104
                     59*******9.*******99933....359***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.89E-2954110No hitNo description
PROSITE profilePS5103221.54955112IPR001471AP2/ERF domain
SMARTSM003802.3E-3455118IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2155111IPR016177DNA-binding domain
PfamPF008471.6E-1555104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-2955110IPR001471AP2/ERF domain
PRINTSPR003672.6E-115667IPR001471AP2/ERF domain
PRINTSPR003672.6E-117894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MHDTPNEEEE KTEGEKSERH EKTREKAIII ENEKTEVISK EKTKEKKLMQ GNAKKYKGVR  60
QRKWGKWVAE VRDTRKKNRI WLGTFDTAEE AALAYDKAVI EMRGVDAMTN ILKPPPREPP  120
PKEINFINPP PSSSKDDARV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-19551111471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783397.19e-98PREDICTED: ethylene-responsive transcription factor ERF069-like
SwissprotQ9SUE38e-25CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A1U7WU032e-96A0A1U7WU03_NICSY; ethylene-responsive transcription factor ERF069-like
STRINGXP_009783397.13e-97(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-26cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]