PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016493537.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRF | ||||||||
Protein Properties | Length: 349aa MW: 39031.4 Da PI: 7.7984 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.4 | 2.9e-24 | 78 | 122 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH++rgr+rsrk++e+ XP_016493537.1 78 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMNRGRNRSRKHVES 122 79****************************************986 PP | |||||||
2 | QLQ | 64.5 | 2.6e-22 | 17 | 52 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+++yKyL+a+ PvPp+L+++i++ XP_016493537.1 17 PFTAVQWQELEHQAMIYKYLVAGIPVPPDLVVPIRR 52 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.5E-13 | 16 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.884 | 17 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.7E-16 | 17 | 51 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.98 | 78 | 122 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.6E-20 | 79 | 121 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MSGTTMRTVA EDGYRPPFTA VQWQELEHQA MIYKYLVAGI PVPPDLVVPI RRSFEAISAR 60 FFHHTSLGYC SYYGKKFDPE PGRCRRTDGK KWRCSKDAYP DSKYCERHMN RGRNRSRKHV 120 ESQSTSQSLL TSMSNNATGS SKTSGNFQSS SSGSLQNMPL YSAAYSEGPN YGSTGTKMQM 180 EPVSYGIDNK AYRYFHGMAA DADEQNFSLE ASASMRSLGM GSNADSTWCL TPQLPSNPMV 240 KPKNETQLLY GSPQTRLPHP FEPMIDATIS KQQQHCFFDS DIGSPGTVKQ EERSMRPFFD 300 EWPTAKESWS NLDDEGSIKN NFSSTQLSIS IPMAPSESFS RSSCSPNDV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009790531.1 | 0.0 | PREDICTED: growth-regulating factor 4-like isoform X1 | ||||
Refseq | XP_009790532.1 | 0.0 | PREDICTED: growth-regulating factor 4-like isoform X1 | ||||
Refseq | XP_016493536.1 | 0.0 | PREDICTED: growth-regulating factor 4-like isoform X1 | ||||
Refseq | XP_016493537.1 | 0.0 | PREDICTED: growth-regulating factor 4-like isoform X1 | ||||
TrEMBL | A0A1S4BXA4 | 0.0 | A0A1S4BXA4_TOBAC; growth-regulating factor 4-like isoform X1 | ||||
TrEMBL | A0A1U7XLP5 | 0.0 | A0A1U7XLP5_NICSY; growth-regulating factor 4-like isoform X1 | ||||
STRING | XP_009790531.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-50 | growth-regulating factor 5 |