PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016493388.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 465aa    MW: 51045.7 Da    PI: 4.6555
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016493388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.71.3e-33246300155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWtpeLHe+Fveav++LGGse+AtPk +l+lmkv+gLt++h+kSHLQkYR+
  XP_016493388.1 246 KQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHIKSHLQKYRT 300
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-31243302IPR009057Homeodomain-like
PROSITE profilePS5129413.374243303IPR017930Myb domain
SuperFamilySSF466898.42E-18244300IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-25246300IPR006447Myb domain, plants
PfamPF002492.8E-10248299IPR001005SANT/Myb domain
PfamPF143799.2E-25331378IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0016036Biological Processcellular response to phosphate starvation
GO:0055063Biological Processsulfate ion homeostasis
GO:0071486Biological Processcellular response to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MEARPTLSVQ RAGAHQLSNF GASGPHSSLP MLPANLEDKY PMLPRAVLSS LPSNSGVVGH  60
LLSLSSGFST NLHFSSVLPH EEHSAPIPFI SQSTNNEALI PLANSGVLQS AASSQYLNEN  120
NEPWCTAPLP DYIDYSINTP VHNTQLDCSN TGDCLIPSED LSKQSDWPEW ADLVMNDDDA  180
LTSNWNDIMV DTSIADAEPK MQYQEQKQPS NFPVDQCQPL QQIPTASVET SAIVPASSTA  240
SGASSKQRMR WTPELHEAFV EAVNKLGGSE RATPKGVLKL MKVEGLTIYH IKSHLQKYRT  300
ARYKPEASEG SSEKKESSIG DLSALDLKTG IEITEALRLQ MEVQKQLHEQ LEIQRNLQLR  360
IEEQGRYLQE MFEKQCKSIP SIDLVKASSS IAEDASAQST DAVQRSSNKN DPGVPPSNPQ  420
EAGDYIAQKV GEKQKEQERE DLENPETNIS SSSNTPPTKR AKLDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-32246304260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-32246304260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-32246304260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-32246304260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-32246304260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-32246304260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-32246304260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-32246304260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0176930.0AB017693.1 Nicotiana tabacum WERBP-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016493388.10.0PREDICTED: protein PHR1-LIKE 1-like
TrEMBLA0A1S4BX120.0A0A1S4BX12_TOBAC; protein PHR1-LIKE 1-like
STRINGXP_009599673.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27532349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.18e-85phosphate starvation response 1