PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016493308.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 330aa MW: 37565.5 Da PI: 8.2134

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016493308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.1	2e-33	21	75	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rFv+av+qLGG+ekAtPk+++++m+++gLtl+h+kSHLQkYRl XP_016493308.1 21 KPRLKWTPDLHQRFVDAVAQLGGPEKATPKSLMRVMNIHGLTLYHLKSHLQKYRL 75 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.97	18	78	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.6E-31	19	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.43E-15	20	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.2E-23	21	76	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-8	23	74	IPR001005	SANT/Myb domain
Pfam	PF14379	9.9E-22	118	164	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MALQNAQQNK DMNLILSSDA KPRLKWTPDL HQRFVDAVAQ LGGPEKATPK SLMRVMNIHG 60 LTLYHLKSHL QKYRLGKSQA TDQSFDANKQ EEFREPQSDK LSLDNCDGAQ NQMNESWKIA 120 RALQMQMEVQ RKLHQQIEVQ RHLQLRMEAQ GKYLQSVLKK AQETLAGYDT SSVGVELAKA 180 ELSQLVSMVN MGCCPTSPLS AITEIDGSIS KDTERKQLNG EILCSLESSL TSSESSGWKE 240 DQNNTRNTNT SIALSLNPET KEKKRRRNNI CDDICVEQPS RKRCHNQRSE NLAKIEFLET 300 IDLNKCPNEY KHGPKVIDLN NKEVEQFQRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	1e-48	HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBank	HG975517	1e-48	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009777109.1	0.0	PREDICTED: uncharacterized protein LOC104226747
Refseq	XP_016493308.1	0.0	PREDICTED: uncharacterized protein LOC107812672
Swissprot	F4I274	4e-80	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A1S4BWS8	0.0	A0A1S4BWS8_TOBAC; uncharacterized protein LOC107812672
TrEMBL	A0A1U7WQZ3	0.0	A0A1U7WQZ3_NICSY; uncharacterized protein LOC104226747
STRING	XP_009777109.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6036	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	7e-81	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]