PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016493293.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 363aa MW: 40729 Da PI: 6.5186

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016493293.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.3	5.6e-13	162	208	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er+RR ++ +++ Lr+++P++ K++ a+i++ A+eYI++L XP_016493293.1 162 TKHFATERQRRVHLTDKYKALRSMVPNP-----SKNDRASIVKDAIEYINEL 208 78***********************9.....7*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.488	159	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-13	162	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.12E-11	162	213	No hit	No description
Pfam	PF00010	1.3E-10	162	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-14	162	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-10	165	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MLLMTYKMVI NSLPEAPYNL PTPDLLNMFP LPRSSISFTN TNTNQASNLL TSLGLLGDIN 60 IPATADGASN SNSSAVYDPS LLPLNLPPQP PLLRELFHSL PHGYGLRNLR STTSFFNGLE 120 ERNQLSGALY QDGEERPFDN GIFEFSADMN GIAKNRDIGK DTKHFATERQ RRVHLTDKYK 180 ALRSMVPNPS KNDRASIVKD AIEYINELKR EVHDLELMVE KKRCSRDRIK RQKTEEGGNS 240 MDGNDSKQMD EVDQSYNGNS LRSSWLQRRS KNTEVDVHVV DDEVTIKLVQ QKRINCLLFA 300 SKVLDDLQLD LHHVAGGLIG DYYSFLFNSK ICEGSTVYAS AIAKKLIEVV DIQYAAIAPT 360 NSC

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MLLMTYKMVI NSLPEAPYNL PTPDLLNMFP LPRSSISFTN TNTNQASNLL TSLGLLGDIN  60
IPATADGASN SNSSAVYDPS LLPLNLPPQP PLLRELFHSL PHGYGLRNLR STTSFFNGLE  120
ERNQLSGALY QDGEERPFDN GIFEFSADMN GIAKNRDIGK DTKHFATERQ RRVHLTDKYK  180
ALRSMVPNPS KNDRASIVKD AIEYINELKR EVHDLELMVE KKRCSRDRIK RQKTEEGGNS  240
MDGNDSKQMD EVDQSYNGNS LRSSWLQRRS KNTEVDVHVV DDEVTIKLVQ QKRINCLLFA  300
SKVLDDLQLD LHHVAGGLIG DYYSFLFNSK ICEGSTVYAS AIAKKLIEVV DIQYAAIAPT  360
NSC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	1e-114	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800020.1	0.0	PREDICTED: transcription factor bHLH91-like
Refseq	XP_016493293.1	0.0	PREDICTED: transcription factor bHLH91-like
TrEMBL	A0A1S4BWR1	0.0	A0A1S4BWR1_TOBAC; transcription factor bHLH91-like
TrEMBL	A0A1U7YMG0	0.0	A0A1U7YMG0_NICSY; transcription factor bHLH91-like
STRING	XP_009800020.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2696	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	5e-62	bHLH family protein