PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016493163.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 552aa MW: 62783.2 Da PI: 6.3971

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016493163.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	299.7	7.3e-92	181	550	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl.fsevsPilkfs 94 + Ll++Ae vs+++ +a+++L++ + las++g+p qR+++yf++AL++r+ r++ +l+ + ++ et+ + ++++ a +l f++ P+ ++ XP_016493163.1 181 AQILLAAAEKVSDQQYDRARKMLSQCQPLASNTGNPAQRAVFYFAQALEERIDRETGRLMPKTHSVETDGSIcIASRFDASHLaFHQEVPFTQVV 275 689*************************************************766666666555555443666666666667******* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 h+t qaIle+v+++ +vH +Df i G+QW++L+qa a+R+ ++ +++iT+++s ++ke++eetg+ L++fA++l+ p++f+++ + ++ XP_016493163.1 276 HFTGIQAILESVATKPKVHLVDFLIRTGVQWASLIQAAAERKdNPIEHMKITVIES---VNKERVEETGKSLESFAKSLNFPLSFKIVFLPDRNQ 367 *************************************955566*****...78**********************9999 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 l+ ++++vkp+E +++ ++ l + e+ +le +++v++l+P+++vv+e ea+ ns+ F++rf+++l yysa+fd+le + r++++r+ XP_016493163.1 368 LTEDHFDVKPDEGVVIYAAFFLRAMICEPNCLET----AMRVVRRLQPELMVVSEVEANQNSPMFVNRFIDSLFYYSAFFDCLEDVMKRDDQHRM 458 **********************88888888....***************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++E + gr i+n+v eg+er+ r +l Wr+ l+++G+++v+lse+ qa+l++++++ + + + + sl+ Wk+ p++ +SaW+ XP_016493163.1 459 TLESVTYGRGIRNIVGSEGKERVCRSVNLDVWRSFLKRFGMEEVKLSETCLYQANLIIQQFAcRNSCTADINGRSLIVSWKGTPIYITSAWK 550 **********************************************************888899999999***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.004	154	529	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-89	181	550	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence Send to blast
MANPLSHLAS FTSNQISGSD HSLIVCREDI AKSYNQLSVM EDSTDIQNFC TNYGFYQDYA 60 VNPQVQEMNK QQEEMNVYAV TPQVQTGSHV DKSHFSSLGP FELLRNNPSR CKNTEGDKIR 120 NMNDRANAYQ KLSAMQIMKL AGERFIQFSS NKFININNLL HPYGSALSNL SPDDNQDVEL 180 AQILLAAAEK VSDQQYDRAR KMLSQCQPLA SNTGNPAQRA VFYFAQALEE RIDRETGRLM 240 PKTHSVETDG SICIASRFDA SHLAFHQEVP FTQVVHFTGI QAILESVATK PKVHLVDFLI 300 RTGVQWASLI QAAAERKDNP IEHMKITVIE SVNKERVEET GKSLESFAKS LNFPLSFKIV 360 FLPDRNQLTE DHFDVKPDEG VVIYAAFFLR AMICEPNCLE TAMRVVRRLQ PELMVVSEVE 420 ANQNSPMFVN RFIDSLFYYS AFFDCLEDVM KRDDQHRMTL ESVTYGRGIR NIVGSEGKER 480 VCRSVNLDVW RSFLKRFGME EVKLSETCLY QANLIIQQFA CRNSCTADIN GRSLIVSWKG 540 TPIYITSAWK FH

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence Send to blast

MANPLSHLAS FTSNQISGSD HSLIVCREDI AKSYNQLSVM EDSTDIQNFC TNYGFYQDYA  60
VNPQVQEMNK QQEEMNVYAV TPQVQTGSHV DKSHFSSLGP FELLRNNPSR CKNTEGDKIR  120
NMNDRANAYQ KLSAMQIMKL AGERFIQFSS NKFININNLL HPYGSALSNL SPDDNQDVEL  180
AQILLAAAEK VSDQQYDRAR KMLSQCQPLA SNTGNPAQRA VFYFAQALEE RIDRETGRLM  240
PKTHSVETDG SICIASRFDA SHLAFHQEVP FTQVVHFTGI QAILESVATK PKVHLVDFLI  300
RTGVQWASLI QAAAERKDNP IEHMKITVIE SVNKERVEET GKSLESFAKS LNFPLSFKIV  360
FLPDRNQLTE DHFDVKPDEG VVIYAAFFLR AMICEPNCLE TAMRVVRRLQ PELMVVSEVE  420
ANQNSPMFVN RFIDSLFYYS AFFDCLEDVM KRDDQHRMTL ESVTYGRGIR NIVGSEGKER  480
VCRSVNLDVW RSFLKRFGME EVKLSETCLY QANLIIQQFA CRNSCTADIN GRSLIVSWKG  540
TPIYITSAWK FH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-43	203	550	26	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016493163.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A1S4BWE8	0.0	A0A1S4BWE8_TOBAC; DELLA protein RGL1-like
STRING	XP_009797878.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13910	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	2e-57	RGA-like 2