PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016493114.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 486aa    MW: 56004.4 Da    PI: 7.9777
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016493114.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-182877756
                    --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++ eq+++Le++F+++++p++++r++L++++gL+ +q+k+WFqN+R++ k
  XP_016493114.1 28 HSVEQIQQLETFFKECPHPDENQRRQLSREIGLDPKQIKFWFQNKRTQTK 77
                    788*******************************************9987 PP
2START117.22.2e-372404565205
                     HHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   5 eaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     +a++e v + + +ep W ks          e +++ + k+ +  +     ++e +++sgvv+m++ +l +++ld   ++ ++++    ka t+ev
  XP_016493114.1 240 TATDEIVELFQMNEPIWIKSQidgryfiNRESYEKIYPKPNQ--AyksaARIESSKESGVVTMTAIELIQIFLDPV-RYMNMFPtivtKARTIEV 331
                     678899999************999988888888888888855..345899**************************.66666666666******* PP

                     ECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
           START  85 issg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                     +++    g +qlm+ +l  lsplv  Rdf f+R++rql   +w+ vdvS d+ ++ + s +   + ++pSg++i++++ng+s vtw+ehv+++++
  XP_016493114.1 332 VDTEnfgGSVQLMYEKLHILSPLVGaRDFFFIRCCRQLDPTTWTMVDVSFDNLREIQ-SGGPSQSWKFPSGCVIQDLGNGKSMVTWLEHVHVDDK 425
                     ***9999************************************************99.88999999****************************9 PP

                     XX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 176 lp.hwllrslvksglaegaktwvatlqrqce 205
                     +    l+r lv  ++ +gak+w  tlqr  e
  XP_016493114.1 426 THtNRLYRDLVCGRQTFGAKRWIITLQRMSE 456
                     98799**********************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-18973IPR009057Homeodomain-like
SuperFamilySSF466898.36E-171278IPR009057Homeodomain-like
PROSITE profilePS5007116.0011979IPR001356Homeobox domain
SMARTSM003892.8E-151983IPR001356Homeobox domain
PfamPF000468.5E-162777IPR001356Homeobox domain
CDDcd000861.83E-142777No hitNo description
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PROSITE profilePS5084832.861227460IPR002913START domain
CDDcd088753.06E-87231456No hitNo description
SuperFamilySSF559612.33E-24232458No hitNo description
SMARTSM002342.9E-19236457IPR002913START domain
PfamPF018521.9E-32240456IPR002913START domain
Gene3DG3DSA:3.30.530.201.5E-7290420IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MDDSGNEQIG ESSSSRKRSR RQKLCNRHSV EQIQQLETFF KECPHPDENQ RRQLSREIGL  60
DPKQIKFWFQ NKRTQTKALS ERADNNILRT ENERFHCENM AMREALKNII CPHCDGPPPG  120
EEERKRNLEK MKMANQRLRD EHERISNLIS NFVGRSFAMT SQLAPQNNVG SLSSSSDESL  180
VSQNIINSPI ENQPNNVRGN STANIPPPLL PPPPPPPPFE ENEEIRVDRE KSIIFGTVIT  240
ATDEIVELFQ MNEPIWIKSQ IDGRYFINRE SYEKIYPKPN QAYKSAARIE SSKESGVVTM  300
TAIELIQIFL DPVRYMNMFP TIVTKARTIE VVDTENFGGS VQLMYEKLHI LSPLVGARDF  360
FFIRCCRQLD PTTWTMVDVS FDNLREIQSG GPSQSWKFPS GCVIQDLGNG KSMVTWLEHV  420
HVDDKTHTNR LYRDLVCGRQ TFGAKRWIIT LQRMSERHNF AMNANNHDFG GARGTFFFLK  480
VNFFAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016493114.10.0PREDICTED: homeobox-leucine zipper protein ROC8-like
TrEMBLA0A1S4BW720.0A0A1S4BW72_TOBAC; homeobox-leucine zipper protein ROC8-like
STRINGXP_009771801.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10211732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-111homeodomain GLABROUS 11