PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016493060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 261aa MW: 27525 Da PI: 10.5886 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.3 | 5.4e-38 | 34 | 131 | 2 | 99 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa. 95 ++kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ +s+ss+ ++ sa+ XP_016493060.1 34 TVKKPPVKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFS-TVSVSVRSSSSSILTSSISAPl 127 689******************************************************************888.2333333332333322222221 PP TCP 96 kskk 99 +k+ XP_016493060.1 128 DHKQ 131 2222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.613 | 40 | 94 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.5E-34 | 41 | 128 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MSTSAEGNGA IIDPHQRQQQ QNPSGGGGTN GALTVKKPPV KDRHSKVDGR GRRIRMPIVC 60 AARVFQLTRE LGHKSDGQTI EWLLRQAEPS IIAATGTGTI PASFSTVSVS VRSSSSSILT 120 SSISAPLDHK QPPSSQPLIS PAPFILGKRL RPDDESIENG NKEDVGPAAT VVGPTSGFWA 180 VPARPDFGQV WSFAAAPPEM MAPTSAALSL QSSRFFQQQM GEASAARVGN YLPMTQGHLN 240 LLASLSGPLQ PSSGRRDADG R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016493043.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Refseq | XP_016493044.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Refseq | XP_016493045.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Refseq | XP_016493046.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Refseq | XP_016493047.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Refseq | XP_016493048.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Refseq | XP_016493049.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Refseq | XP_016493050.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Refseq | XP_016493051.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Refseq | XP_016493052.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Refseq | XP_016493053.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Refseq | XP_016493054.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Refseq | XP_016493055.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Refseq | XP_016493056.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Refseq | XP_016493057.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Refseq | XP_016493059.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Refseq | XP_016493060.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Refseq | XP_016493061.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Refseq | XP_016493062.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Refseq | XP_016493063.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 2e-89 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A1S4BVZ2 | 0.0 | A0A1S4BVZ2_TOBAC; transcription factor TCP7-like | ||||
STRING | XP_009588219.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-81 | TCP family protein |