PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016492777.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 581aa    MW: 62913.1 Da    PI: 4.5375
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016492777.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.34.1e-061474755
                    --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                    f+++++ e+e+  +      p +e    LA+k            ++ +qV +WFqNrR+  
  XP_016492777.1 14 FNATEVAEMEAILQAhnATMPAREVLVALAEKFsssaersgkiMVQMKQVWNWFQNRRYAI 74
                    666666777777764325567777777888888888888887799*************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-9475IPR009057Homeodomain-like
SMARTSM003890.006781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-61379IPR009057Homeodomain-like
PROSITE profilePS500718.9241377IPR001356Homeobox domain
CDDcd000860.002051375No hitNo description
PfamPF167191.8E-41161288IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MGRPPSNGGP TFRFNATEVA EMEAILQAHN ATMPAREVLV ALAEKFSSSA ERSGKIMVQM  60
KQVWNWFQNR RYAIRAKTAK VPGKFSTPSV PQSDPAMVRA PAKLSTSPVP QSDPAAVRIM  120
PQAPQPIPSP QVKSMPQAPQ PLPAPSVAVQ NVGRSASDNI QMEFEAKSAR DGAWYDVASF  180
LSHRSVETAD PEVLVRFAGF GAEEDEWVNV RKHVRQRSLP CESSECVAVL PGDLILCFQE  240
GKEQALYFDA HVLDAQRRRH DVRGCRCRFL VRYDHDQSEE IVPLRKVCRR PETDYRLQQL  300
NAESLKQQKI GNDITRGNTT KVYPPAETTQ KAQTESRIIA AEPTQKQPAP EDTTKPVPNF  360
APMQLQKSST DSLTGNTLAE TTPQCMEEMT EKPVAGTTEV PDEAPEKSPV EAPAETAGKS  420
PAETTLEPPA ASTSKPDEAP EEPPTETTLK PPAASTTKPD EAAEQPPAEA TLKPPAPSTS  480
NPDEAPEEPP AETTLEPPAD STSKPAEEPE EPPAETTLEP PADSTSKPAE EPEEPPAETS  540
LKPPADSISK PAEAPAEQPK EEEHVYAGAT AASMDHDNAS V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-481622924134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-481622924134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-481622924134SHH1 SAWADEE
4iur_B3e-481622924134SHH1 SAWADEE
4iut_A3e-481622924134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-481622924134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-481622924134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-481622924134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-481622924134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-481622924134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-90HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016492777.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X2
SwissprotQ8RWJ71e-141SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1S4BV720.0A0A1S4BV72_TOBAC; protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X2
STRINGXP_009628382.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-129sequence-specific DNA binding transcription factors;sequence-specific DNA binding