PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016492776.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HB-other | ||||||||
Protein Properties | Length: 583aa MW: 63113.3 Da PI: 4.5375 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 18.3 | 4.1e-06 | 14 | 74 | 7 | 55 |
--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 f+++++ e+e+ + p +e LA+k ++ +qV +WFqNrR+ XP_016492776.1 14 FNATEVAEMEAILQAhnATMPAREVLVALAEKFsssaersgkiMVQMKQVWNWFQNRRYAI 74 666666777777764325567777777888888888888887799*************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.84E-9 | 4 | 75 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.006 | 7 | 81 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 8.924 | 13 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 0.00201 | 13 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-6 | 13 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF16719 | 1.9E-41 | 163 | 290 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 583 aa Download sequence Send to blast |
MGRPPSNGGP TFRFNATEVA EMEAILQAHN ATMPAREVLV ALAEKFSSSA ERSGKIMVQM 60 KQVWNWFQNR RYAIRAKTAK VPGKFSTPSV PQSDPAMVRA PAKLSTSPVP QSDPAAVRIM 120 PQAPQPIPSP QVTVKSMPQA PQPLPAPSVA VQNVGRSASD NIQMEFEAKS ARDGAWYDVA 180 SFLSHRSVET ADPEVLVRFA GFGAEEDEWV NVRKHVRQRS LPCESSECVA VLPGDLILCF 240 QEGKEQALYF DAHVLDAQRR RHDVRGCRCR FLVRYDHDQS EEIVPLRKVC RRPETDYRLQ 300 QLNAESLKQQ KIGNDITRGN TTKVYPPAET TQKAQTESRI IAAEPTQKQP APEDTTKPVP 360 NFAPMQLQKS STDSLTGNTL AETTPQCMEE MTEKPVAGTT EVPDEAPEKS PVEAPAETAG 420 KSPAETTLEP PAASTSKPDE APEEPPTETT LKPPAASTTK PDEAAEQPPA EATLKPPAPS 480 TSNPDEAPEE PPAETTLEPP ADSTSKPAEE PEEPPAETTL EPPADSTSKP AEEPEEPPAE 540 TSLKPPADSI SKPAEAPAEQ PKEEEHVYAG ATAASMDHDN ASV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 3e-48 | 164 | 294 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 3e-48 | 164 | 294 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 3e-48 | 164 | 294 | 4 | 134 | SHH1 SAWADEE |
4iur_B | 3e-48 | 164 | 294 | 4 | 134 | SHH1 SAWADEE |
4iut_A | 3e-48 | 164 | 294 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 3e-48 | 164 | 294 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 3e-48 | 164 | 294 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 3e-48 | 164 | 294 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 3e-48 | 164 | 294 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 3e-48 | 164 | 294 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 1e-90 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016492776.1 | 0.0 | PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1 | ||||
Swissprot | Q8RWJ7 | 1e-141 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A1S4BV62 | 0.0 | A0A1S4BV62_TOBAC; protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1 | ||||
STRING | XP_009628382.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8803 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 1e-128 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |