PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016492581.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 381aa MW: 43567.2 Da PI: 7.5036

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016492581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.2e-32	77	130	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH rF++ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ XP_016492581.1 77 PRLRWTPELHLRFIHAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 130 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.0E-30	73	131	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.249	73	133	IPR017930	Myb domain
SuperFamily	SSF46689	8.24E-16	74	132	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.5E-23	77	132	IPR006447	Myb domain, plants
Pfam	PF00249	3.4E-10	78	129	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MKRGSSAEDS KSSPKNQIEF EEEEEEEEEE EEDDLETEEN SKPKGTRTSS SNSTVEENGK 60 KSTNSGGVRQ YVRSKTPRLR WTPELHLRFI HAVERLGGQD RATPKLVLQL MNIKGLSIAH 120 VKSHLQMYRS KKTDDPNQIS TDGRFLIENG DHNIFNLSQL PRLQGTFNQA SSSSLRYEDS 180 LWNRQANSSM YNPYNINIGS TSSISTRHGF SSHGHSHAQL FPWNKTLQIE KKPQHFHNQR 240 FWSTQIGTSS TKQNLLMTLP IDRERDRRRE QEIIKLQMRT NNFLSSREKG CTTEAETTTT 300 TITTNAPNKR KIQDSEITLD LNLSLKIKRE DDNHQKRLKA EEVGNLLSLS LFSSSTTSMD 360 DQENHGGEKN TRMASTLDLT L

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MKRGSSAEDS KSSPKNQIEF EEEEEEEEEE EEDDLETEEN SKPKGTRTSS SNSTVEENGK  60
KSTNSGGVRQ YVRSKTPRLR WTPELHLRFI HAVERLGGQD RATPKLVLQL MNIKGLSIAH  120
VKSHLQMYRS KKTDDPNQIS TDGRFLIENG DHNIFNLSQL PRLQGTFNQA SSSSLRYEDS  180
LWNRQANSSM YNPYNINIGS TSSISTRHGF SSHGHSHAQL FPWNKTLQIE KKPQHFHNQR  240
FWSTQIGTSS TKQNLLMTLP IDRERDRRRE QEIIKLQMRT NNFLSSREKG CTTEAETTTT  300
TITTNAPNKR KIQDSEITLD LNLSLKIKRE DDNHQKRLKA EEVGNLLSLS LFSSSTTSMD  360
DQENHGGEKN TRMASTLDLT L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	78	132	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	78	132	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-16	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	78	132	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	78	132	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	78	132	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	78	132	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	78	132	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	78	132	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016492581.1	0.0	PREDICTED: putative two-component response regulator ARR20 isoform X2
TrEMBL	A0A1S4BUN1	0.0	A0A1S4BUN1_TOBAC; putative two-component response regulator ARR20 isoform X2
STRING	XP_009611229.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-48	G2-like family protein