PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016492494.1
Common NameGLO
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 196aa    MW: 23141.4 Da    PI: 9.1313
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016492494.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.91.7e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien+snrqvt+skRrngilKKA+E+SvLCda+v+viif+s+gk++e+ss
  XP_016492494.1  9 KRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSS 59
                    79***********************************************96 PP
2K-box45.92.5e-1669151196
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     y+k +g++l++ak+e+l++e++k+kk ++n+q e             l+eL+ Le++Le++l++iR+k+ne+l+++ +++q +e+e+++ n +Lr
  XP_016492494.1  69 YHKLTGRRLWDAKQENLDNEINKVKKDNDNMQIE-------------LRELMMLEDALENGLTSIRNKQNEFLRMMRKKTQSMEEEQDQLNCQLR 150
                     78999999*************************9.............89*********************************************9 PP

           K-box  96 k 96 
                     +
  XP_016492494.1 151 Q 151
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.31161IPR002100Transcription factor, MADS-box
CDDcd002651.50E-41278No hitNo description
SuperFamilySSF554551.7E-35294IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.37164160IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGILK KAKEISVLCD ARVSVIIFAS SGKMHEFSST  60
SLVDILDQYH KLTGRRLWDA KQENLDNEIN KVKKDNDNMQ IELRELMMLE DALENGLTSI  120
RNKQNEFLRM MRKKTQSMEE EQDQLNCQLR QLEIASMNRN MGEIGEVFHQ RENEYQTQIP  180
FAFRVQPMQP NLQERF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-18169169MEF2 CHIMERA
6byy_B4e-18169169MEF2 CHIMERA
6byy_C4e-18169169MEF2 CHIMERA
6byy_D4e-18169169MEF2 CHIMERA
6bz1_A4e-18169169MEF2 CHIMERA
6bz1_B4e-18169169MEF2 CHIMERA
6bz1_C4e-18169169MEF2 CHIMERA
6bz1_D4e-18169169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9377781e-162HG937778.1 Nicotiana tomentosiformis partial mRNA for Type II (MIKC) MADS-box transcription factor (GLOBOSA gene), cultivar NIC479/84, clone GLO3TO1.
GenBankHG9377791e-162HG937779.1 Nicotiana tabacum partial mRNA for Type II (MIKC) MADS-box transcription factor (GLOBOSA gene), cultivar SR1, clone GLO3TA3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588907.11e-143PREDICTED: floral homeotic protein GLOBOSA isoform X2
RefseqXP_016492494.11e-143PREDICTED: floral homeotic protein GLOBOSA-like isoform X2
SwissprotQ034161e-136GLOB_TOBAC; Floral homeotic protein GLOBOSA
TrEMBLA0A1S4BUE11e-142A0A1S4BUE1_TOBAC; floral homeotic protein GLOBOSA-like isoform X2
STRINGXP_009588903.11e-139(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.17e-66MIKC_MADS family protein
Publications ? help Back to Top
  1. Hansen G,Estruch JJ,Sommer H,Spena A
    NTGLO: a tobacco homologue of the GLOBOSA floral homeotic gene of Antirrhinum majus: cDNA sequence and expression pattern.
    Mol. Gen. Genet., 1993. 239(1-2): p. 310-2
    [PMID:8099711]