PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016492392.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 185aa MW: 20670.1 Da PI: 6.632 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 103.8 | 1.2e-32 | 1 | 79 | 17 | 95 |
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 m+++lP++ak+s+dake +qe vsefi +t+ a+++c+re+r+t++++d++wa+ ++G+ +yv pl++yl+k+re e+ XP_016492392.1 1 MRRILPQHAKVSDDAKEAIQELVSEFINHITNLANERCHREQRRTVTAEDVIWAMNKIGLTNYVGPLTLYLQKHREQEA 79 89**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.08E-26 | 1 | 85 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 9.9E-33 | 1 | 85 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.7E-16 | 1 | 55 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.7E-9 | 19 | 37 | No hit | No description |
PRINTS | PR00615 | 3.7E-9 | 38 | 56 | No hit | No description |
PRINTS | PR00615 | 3.7E-9 | 57 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 185 aa Download sequence Send to blast |
MRRILPQHAK VSDDAKEAIQ ELVSEFINHI TNLANERCHR EQRRTVTAED VIWAMNKIGL 60 TNYVGPLTLY LQKHREQEAS GQRIRPNTVR PNVELGLARR TGSAQVLPIN YAPGPGYSYP 120 HFPPTGVFYD PAVHVMMNGF NDMINYMRSE EEIGENDGPA ESSSSTATNY GVPAGVNDPN 180 GHLKQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-34 | 1 | 76 | 22 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016492392.1 | 1e-137 | PREDICTED: nuclear transcription factor Y subunit B-6-like | ||||
TrEMBL | A0A1S4BU35 | 1e-136 | A0A1S4BU35_TOBAC; nuclear transcription factor Y subunit B-6-like | ||||
STRING | XP_009784547.1 | 1e-135 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16246 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47670.2 | 5e-36 | nuclear factor Y, subunit B6 |