PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016492374.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 259aa    MW: 28914.5 Da    PI: 10.0632
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016492374.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-19125173355
             AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr ++ +grW AeIrd       r r++lg+f+t+eeAa+a++aa++ l+g
  XP_016492374.1 125 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTPEEAARAYDAAARWLRG 173
                     9*******.**********32....25**********************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-13124173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-29124181IPR001471AP2/ERF domain
SMARTSM003804.8E-32124187IPR001471AP2/ERF domain
PROSITE profilePS5103222.062124181IPR001471AP2/ERF domain
PRINTSPR003672.9E-10125136IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-21125182IPR016177DNA-binding domain
CDDcd000181.28E-20125182No hitNo description
PRINTSPR003672.9E-10147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MYTHSQKLPK TDPFFLSKQQ SLYPNEPIDH LCIDSTNYLD PLHSFSEFPT PEHDQKSPVL  60
EGIAAVVGEH VLFGSCNNKN KRSVDQNSES TTAVSILKRT CHAPDKYRGG EGKEEKRNVP  120
VERSYRGVRK RPWGRWSAEI RDRIGRCRHW LGTFDTPEEA ARAYDAAARW LRGSKARTNF  180
QIPPVVPLPL HSSPTSTSSS SNTSAEEKKN KKNIPCAKRN TPNNNRKCSV VTSAAHLFSS  240
SSTPAVELDL KLGIGKKSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-16117180671Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6690880.0AB669088.1 Nicotiana tabacum NtERF#231 gene for ethylene response factor #231, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016492374.10.0PREDICTED: ethylene-responsive transcription factor ERF084-like
SwissprotQ9M8M51e-28ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A1S4BU160.0A0A1S4BU16_TOBAC; ethylene-responsive transcription factor ERF084-like
STRINGXP_009798051.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA115522225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-30ERF family protein