PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016492349.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 281aa MW: 30064.1 Da PI: 10.1538 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117.9 | 4e-37 | 35 | 91 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +kcprCds+ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGggrrk k + XP_016492349.1 35 PQKCPRCDSNNTKFCYYNNYSLTQPRYFCKTCRRYWTQGGTLRNVPVGGGRRKGKCT 91 689**************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-20 | 5 | 81 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-31 | 36 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.23 | 36 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 38 | 74 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MEQGRSGGES DRNQQRKMKM PENLSAVAPP PQPPPQKCPR CDSNNTKFCY YNNYSLTQPR 60 YFCKTCRRYW TQGGTLRNVP VGGGRRKGKC TTRGGGGSSS SSAGESSSRS SQGAQLPPVV 120 ALNMTTNLSA AAAFFSGNSI SRSQPLNSLY SSGGFLPSLA AMQSQGVNQP SNSPFGGTSN 180 TVLLQGFHNL PKEPQQSGFY QMVNKEKSNE SSFYLSDQTL QFQPTRPMGS WTQRFINNNM 240 DSWNSSAGSS SGSGGATNST TAGSSLSPNQ WPDMPGFGPS P |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 9e-74 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009775304.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.8-like | ||||
Refseq | XP_016492349.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.8-like | ||||
TrEMBL | A0A1S4BTY8 | 0.0 | A0A1S4BTY8_TOBAC; dof zinc finger protein DOF5.8-like | ||||
TrEMBL | A0A1U7WKV2 | 0.0 | A0A1U7WKV2_NICSY; dof zinc finger protein DOF5.8-like | ||||
STRING | XP_009775304.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 1e-26 | TARGET OF MONOPTEROS 6 |