PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016492247.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 300aa MW: 33230.7 Da PI: 7.7609 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.2 | 5.1e-40 | 36 | 97 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+a+kcprCds+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss XP_016492247.1 36 PEQAQKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 97 68999*****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.2E-33 | 38 | 94 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.311 | 40 | 94 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 42 | 78 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 5.0E-24 | 44 | 93 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MDPSNGQHHH QELSSQTLES MLVSTKPQQD KKPKPPEQAQ KCPRCDSSNT KFCYYNNYSL 60 SQPRYFCKSC RRYWTKGGTL RNVPVGGGCR KNKRSSSRST SQDHSINTCP NNPLSSLTTP 120 MSYDSTDLSL AFARLQKQGN VHLGIESHNI SLMCNGTNIA PSEVQSGYFD ALRGGFLENP 180 NGFHQNLYYG VGNIGDMGHH VENGGMGMNY NASDQEMGSM HYDQEISSGV TTTTATTVTT 240 VKQEMCSMSR DQGDNRVLWG FPWQINNGDG NMGTDFDSSR RIWNGVGGNS WHGLLNSPLM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 3e-80 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622795.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.1-like | ||||
Refseq | XP_016492247.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.1-like | ||||
TrEMBL | A0A1S4BTN8 | 0.0 | A0A1S4BTN8_TOBAC; dof zinc finger protein DOF2.1-like | ||||
STRING | XP_009622795.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28510.1 | 9e-41 | Dof family protein |