PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016492247.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 300aa    MW: 33230.7 Da    PI: 7.7609
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016492247.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.25.1e-403697263
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                    +e+a+kcprCds+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  XP_016492247.1 36 PEQAQKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 97
                    68999*****************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.2E-333894IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3114094IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104278IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-244493IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDPSNGQHHH QELSSQTLES MLVSTKPQQD KKPKPPEQAQ KCPRCDSSNT KFCYYNNYSL  60
SQPRYFCKSC RRYWTKGGTL RNVPVGGGCR KNKRSSSRST SQDHSINTCP NNPLSSLTTP  120
MSYDSTDLSL AFARLQKQGN VHLGIESHNI SLMCNGTNIA PSEVQSGYFD ALRGGFLENP  180
NGFHQNLYYG VGNIGDMGHH VENGGMGMNY NASDQEMGSM HYDQEISSGV TTTTATTVTT  240
VKQEMCSMSR DQGDNRVLWG FPWQINNGDG NMGTDFDSSR RIWNGVGGNS WHGLLNSPLM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755183e-80HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622795.10.0PREDICTED: dof zinc finger protein DOF2.1-like
RefseqXP_016492247.10.0PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBLA0A1S4BTN80.0A0A1S4BTN8_TOBAC; dof zinc finger protein DOF2.1-like
STRINGXP_009622795.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.19e-41Dof family protein