PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016492240.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CPP
Protein Properties Length: 693aa    MW: 74570.3 Da    PI: 5.7502
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016492240.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.12.7e-16386424240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk 
  XP_016492240.1 386 SCKRCNCKKSKCLKLYCECFAAGVYCVEPCACQDCFNKP 424
                     689**********************************96 PP
2TCR51.32.3e-16471509139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  XP_016492240.1 471 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 509
                     589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.6E-17385426IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.848386511IPR005172CRC domain
PfamPF036388.4E-12388423IPR005172CRC domain
SMARTSM011147.5E-18471512IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.6E-12473509IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MLDAVNNSIE PKESFGCGIS GGEAPASPSH ECSKLAVELA RSLNYECSSP STLPTGGIKG  60
KSLSEFAGTS VTYVPLVQEI SGKGLLRCEV NMDGTNEIGP DKGEASGCDW ESLITDATDL  120
LIFDSPGDPE AFTKASGPNF RTFEYVSNEI QNVQHFSQVS TSECGGDGSE TEKPSTQPGE  180
ESQLKEYADA ENMKPDASLT NDGTGVGQSE KNDNEMVSAL YRGMRRRCLV FEMVGPRRKH  240
IDEGSGSSAA QEVDGNVVSN DKQLVPSKTV NEYLRCTLPG IGLHLNSLTA SSKDGKVVKQ  300
EANASGKQLV IASGSSINLH SSVTGQESLV KSLPETSRGG EIVPFENSLP LMEDVFQAPG  360
YVNSEEPNQT SPKKKRRRLE TGEGESCKRC NCKKSKCLKL YCECFAAGVY CVEPCACQDC  420
FNKPIHEDTV LATRKQIESR NPLAFAPKVI RTTDSISETG DDSSKTPASA RHKRGCNCKK  480
SGCLKKYCEC YQGGVGCSIN CRCEGCKNAF GRKDGSIFIG IDGDAEEEET DAYEKSIVDR  540
TSHKNLVQSD IEQNPDSAPP ATPLSFGRPP MQLPFSLKNK PPRSSFLSIG SSSSGGIYGA  600
GQGVGRLNLF QPQPKFDKPF ESVQVEEDEI MPEILQGTKS PVSGIKTASP NRKRVSPPHC  660
DYGNSHSHSP GRRSSRKLIL QSIPSFPSLT PNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1839050814120Protein lin-54 homolog
5fd3_B5e-1839050814120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371378PKKKRRRL
2372377KKKRRR
3374378KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016492238.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A1S4BTT60.0A0A1S4BTT6_TOBAC; protein tesmin/TSO1-like CXC 2 isoform X1
STRINGXP_009770238.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-117TESMIN/TSO1-like CXC 2