PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016492238.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CPP
Protein Properties Length: 832aa    MW: 89940.5 Da    PI: 5.8567
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016492238.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.83.3e-16525563240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk 
  XP_016492238.1 525 SCKRCNCKKSKCLKLYCECFAAGVYCVEPCACQDCFNKP 563
                     689**********************************96 PP
2TCR512.8e-16610648139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  XP_016492238.1 610 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 648
                     589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.6E-17524565IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.848525650IPR005172CRC domain
PfamPF036381.0E-11527562IPR005172CRC domain
SMARTSM011147.5E-18610651IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.2E-12612648IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MSTEEEKVSL ERENVVEKES EELVEGRKSV RGGGVKGGVV VVMDTPERNK NQIATPISKF  60
EESPVFNFLN NLSPIKLDKS AHFTQTLNSL SFASIPSVFT SPHVSSIRES RFLRRHLLSD  120
PSKPEFASDN GVKVNTDQGM LDAVNNSIEP KESFGCGISG GEAPASPSHE CSKLAVELAR  180
SLNYECSSPS TLPTGGIKGK SLSEFAGTSV TYVPLVQEIS GKGLLRCEVN MDGTNEIGPD  240
KGEASGCDWE SLITDATDLL IFDSPGDPEA FTKASGPNFR TFEYVSNEIQ NVQHFSQVST  300
SECGGDGSET EKPSTQPGEE SQLKEYADAE NMKPDASLTN DGTGVGQSEK NDNEMVSALY  360
RGMRRRCLVF EMVGPRRKHI DEGSGSSAAQ EVDGNVVSND KQLVPSKTVN EYLRCTLPGI  420
GLHLNSLTAS SKDGKVVKQE ANASGKQLVI ASGSSINLHS SVTGQESLVK SLPETSRGGE  480
IVPFENSLPL MEDVFQAPGY VNSEEPNQTS PKKKRRRLET GEGESCKRCN CKKSKCLKLY  540
CECFAAGVYC VEPCACQDCF NKPIHEDTVL ATRKQIESRN PLAFAPKVIR TTDSISETGD  600
DSSKTPASAR HKRGCNCKKS GCLKKYCECY QGGVGCSINC RCEGCKNAFG RKDGSIFIGI  660
DGDAEEEETD AYEKSIVDRT SHKNLVQSDI EQNPDSAPPA TPLSFGRPPM QLPFSLKNKP  720
PRSSFLSIGS SSSGGIYGAG QGVGRLNLFQ PQPKFDKPFE SVQVEEDEIM PEILQGTKSP  780
VSGIKTASPN RKRVSPPHCD YGNSHSHSPG RRSSRKLILQ SIPSFPSLTP NP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-1852964714120Protein lin-54 homolog
5fd3_B8e-1852964714120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1510517PKKKRRRL
2511516KKKRRR
3513517KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016492238.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A1S4BTT60.0A0A1S4BTT6_TOBAC; protein tesmin/TSO1-like CXC 2 isoform X1
STRINGXP_009770238.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-137TESMIN/TSO1-like CXC 2