PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016492180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 698aa MW: 76123.8 Da PI: 7.4802 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.5 | 4.1e-07 | 262 | 282 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f + G C Gd+C +aHg XP_016492180.1 262 PCPEFKK-GACAKGDSCEYAHG 282 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 1.71E-15 | 27 | 152 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 6.3E-10 | 66 | 137 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 8.5E-17 | 68 | 175 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.626 | 70 | 145 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.003 | 70 | 100 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 1.53E-15 | 72 | 152 | No hit | No description |
PROSITE profile | PS50088 | 12.663 | 105 | 140 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1.5E-4 | 105 | 137 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 254 | 283 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.019 | 257 | 284 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-5 | 257 | 283 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-4 | 262 | 282 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-4 | 289 | 320 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.887 | 292 | 316 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 35 | 292 | 315 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 698 aa Download sequence Send to blast |
MCSGSKSKVC PFDLNMDKKD GVSKNCSKLL ELSASDDLTG FICEVEKGCG IDELSFWYGR 60 KFGSKKMGFE ERTPLMIASM YGSIEILRFI IGTGKVDVNR ACGSDGATAL HCAAAGGSES 120 SIEVVKILVD ASADVNACDS SGNRPCDVIA SYPKWLRNSK RKSLELLLNG SLAELAELEE 180 EEGKAVIQTT KEGSEKKEYP IDTSLPDIND GIYGSDDFRM YCFKVKPCSR AYSHDWTECP 240 FVHPGENARR RDPRKYNYTC VPCPEFKKGA CAKGDSCEYA HGVFESWLHP AQYRTRLCKD 300 ETGCSRKVCF FAHKQEELRP LYASTGSAIP SPKATPVSSM DMSTLSPLAL GSSSMMLPTT 360 TTSTPPMSPA ATCSSPMGGN MWQGKVNLTP PALQLPGSRL KTSLNARDLD LDMEMLGLES 420 IRTQQQLRQQ LIDEMAGLSS PSYWKNDNRM GDLKPTNLDD VFGSMDSQLL SQLQGLSPRM 480 TSNTSSQLYS PSVSHMQGLS PKVTSNTSQL QSPTGLQMRQ NMNQFQGSYS NMSQSSSPLR 540 KPSTYGFDSS AAVAAAVMNS RSAAFAKQRS QSFIDRGGIG HRSGPNGVAN SPPLMSSNMS 600 DWGSPTGKLE WGFNSEDTNK LKRSQSFGFR GGNAAPTRSP ITPSQVNEPD VSWVHSLVKD 660 VSSTGTGLYS SEQKRGSVRD TIPPWLEQMY IDQERIVA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM507320 | 0.0 | KM507320.1 Petunia x hybrida CCCH-type zinc-finger protein (TZF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016492180.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 29-like | ||||
Swissprot | Q9XEE6 | 0.0 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A1S4BTH3 | 0.0 | A0A1S4BTH3_TOBAC; zinc finger CCCH domain-containing protein 29-like | ||||
STRING | XP_009805065.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2558 | 22 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40140.2 | 0.0 | C3H family protein |