PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016492019.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 383aa    MW: 43186 Da    PI: 4.4223
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016492019.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19134183255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  XP_016492019.1 134 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 183
                     89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-29133190IPR001471AP2/ERF domain
PROSITE profilePS5103223.657134191IPR001471AP2/ERF domain
CDDcd000184.34E-33134190No hitNo description
SMARTSM003801.2E-39134197IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-21134190IPR016177DNA-binding domain
PfamPF008471.1E-12134183IPR001471AP2/ERF domain
PRINTSPR003674.5E-10135146IPR001471AP2/ERF domain
PRINTSPR003674.5E-10157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDHHMLCPIK YTEHRNVIRK VTKPSPVKSK KFPEPQKSNQ YNRSVPPKTV RISVTDPDAT  60
DSSSDEEDEL FGRRRVKKYI NEISIETAVK CEVSMPTSGK TAVKKRAADV LQPKQKPMKV  120
KEVQPPQSAG AVRKFRGVRQ RPWGKWAAEI RDPARRVRLW LGTYDTAEEA AMVYDNAAIK  180
LRGPDALTNF ITPPNPEIEF PSNSGYESGN ESRNIPSPTS VLRFRMSQSS EETEQQSRSE  240
PVQEECPSVQ GPMECEQTVQ DVEPVQNVEP FGLPVKQEME ECQGETSMIP GYSNDYLPTD  300
VPFLEDFFNF EAAEQTLFED TMTGFPNDLG TSYNDISSSD FVNDFLFNDD FDDSFQDLGT  360
LGVDDYFQDI GADFSSVDSL LAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21133190159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792604.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
RefseqXP_016492019.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A1S4BT080.0A0A1S4BT08_TOBAC; ethylene-responsive transcription factor CRF4-like
TrEMBLA0A1U7Y0440.0A0A1U7Y044_NICSY; ethylene-responsive transcription factor CRF4-like
STRINGXP_009792604.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-53cytokinin response factor 4