PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016491739.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 383aa    MW: 42107.2 Da    PI: 7.3693
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016491739.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.76.1e-3955115262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     ++  lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ +
  XP_016491739.1  55 QQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIK 115
                     56789*****************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.2E-3358113IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.52559113IPR003851Zinc finger, Dof-type
ProDomPD0074789.0E-2859113IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106197IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MLGDCEKMVL IPSSTTNEWP QQNIQSDEKT LMMSSNGSSD MEKPIQDPQQ QQQQQQPPLK  60
CPRCDSSNTK FCYYNNYSLS QPRHFCKACK RYWTRGGTLR NVPVGGGCRK NKRIKRPSAS  120
SSSTHDITIT SSSALNNTIS ATNPSHHHHI HGSHNIDLSS TTSSNHLNPL FYGLNTERSD  180
LNNNPFARLF SSRVSNATDE GQVYSLTDSI PGLDRRLGLG FSSSSGLMGE NNYGHGFNSI  240
KQIQDVMTNS NTTNSSSLLS SYPMFGSSST SSSTSTMASL IASSLQQQKF ISNGNNFHSL  300
APYEELQMSG NNNNNNNVES GDGMTMLKEE KIEGGGQNRL NWNNLSNHQI HEQIMNSSDP  360
SLSWNGAWLD PSNMGSNSVP SLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6726013e-37DQ672601.1 Lycopersicon esculentum cultivar Ailsa Craig leucine-rich repeat family protein, putative polyprotein, auxin repressed/dormancy associated protein, putative zinc finger protein, putative protease/hydrolase, mitochondrial amino acid carrier, squamosa promoter binding-like protein, putative retroelement pol polyprotein, and Dof zinc finger protein genes, complete cds.
GenBankHG9754413e-37HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755143e-37HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
GenBankJX0228913e-37JX022891.1 UNVERIFIED: Solanum lycopersicoides voucher UCD:TGRC LA2408 putative Dof zinc finger protein-like (Dof01) gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016491739.10.0PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBLA0A1S4BS740.0A0A1S4BS74_TOBAC; dof zinc finger protein DOF1.4-like
STRINGXP_009623141.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.22e-37Dof family protein