PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016491604.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 316aa    MW: 35549.8 Da    PI: 6.1741
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016491604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.6e-14131178355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h  +Er+RR+r+ ++f  L +l+P++     kKl+Ka++L  A++YIk+L+
  XP_016491604.1 131 QDHVVAERKRRERLTQRFIALSTLIPNL-----KKLDKASVLGDAIKYIKQLE 178
                     56999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.12128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-12131178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-18132193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.06E-14133182No hitNo description
SuperFamilySSF474593.27E-17133194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-16134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDMSSATWWS EMERTNMNDH SFINNNHSQM MTPFNELPFN KPFSSCNYVY SSSPSANTTT  60
VATNHFENLN YTSVKTELTS GTTLNFSSSV STDSDDFGDS QNLIQALGFG AADTTTTTQK  120
KSYNRTSLQA QDHVVAERKR RERLTQRFIA LSTLIPNLKK LDKASVLGDA IKYIKQLEEQ  180
VKTLEEKAKN CSEESVVAVK RARVLSSYDD YSSSSDENSS ISTDRSFPDI EVRVSDGNFM  240
ISIYCKKQSG IIKEIYNEVE KLHLSIISSS VMPFGYNTTH MTIIALIDYK LSMTPNHVAN  300
RIRAVMMKEE DTTITA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13132194873Transcription factor MYC2
5gnj_B2e-13132194873Transcription factor MYC2
5gnj_E2e-13132194873Transcription factor MYC2
5gnj_F2e-13132194873Transcription factor MYC2
5gnj_G2e-13132194873Transcription factor MYC2
5gnj_I2e-13132194873Transcription factor MYC2
5gnj_M2e-13132194873Transcription factor MYC2
5gnj_N2e-13132194873Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016491604.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1S4BRT80.0A0A1S4BRT8_TOBAC; transcription factor bHLH18-like
STRINGXP_009771544.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-45bHLH family protein