PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016491526.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 171aa MW: 19868.2 Da PI: 8.6217 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.7 | 2.3e-19 | 14 | 68 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++t++q++ Le F++n++++ +++ +LA++lgL+ rqV +W+qN+Ra++k XP_016491526.1 14 CHKKRLTQDQVRLLEISFNSNNKLDSNRKSQLAQELGLPPRQVAIWYQNKRARWK 68 567789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 112.7 | 2.3e-36 | 15 | 106 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl+++qv+lLE sF++++kL+++rK++la+eLgl prqva+W+qn+RAR+k++ lE+dy+aL++++d+ + +nerL+ eve+L+eel++ XP_016491526.1 15 HKKRLTQDQVRLLEISFNSNNKLDSNRKSQLAQELGLPPRQVAIWYQNKRARWKSQSLEVDYKALQQRLDNAMLDNERLKLEVERLKEELNK 106 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.163 | 10 | 70 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.5E-17 | 13 | 74 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.3E-16 | 15 | 68 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.37E-15 | 15 | 71 | No hit | No description |
SuperFamily | SSF46689 | 1.27E-17 | 15 | 79 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-19 | 17 | 77 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.5E-6 | 41 | 50 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 45 | 68 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.5E-6 | 50 | 66 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MSVYXQTRKN NLKCHKKRLT QDQVRLLEIS FNSNNKLDSN RKSQLAQELG LPPRQVAIWY 60 QNKRARWKSQ SLEVDYKALQ QRLDNAMLDN ERLKLEVERL KEELNKAQEM LLAFNTTTNN 120 YSSISSSCDE VGSSCLQLHD QSKHHLDKEL YACLIGDEGH FGHNFFASSM S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 7 | 17 | RKNNLKCHKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-111 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016491526.1 | 1e-124 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A1S4BRM8 | 1e-122 | A0A1S4BRM8_TOBAC; homeobox-leucine zipper protein ATHB-52-like | ||||
STRING | XP_009611399.1 | 1e-120 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 8e-25 | homeobox protein 52 |