PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016491288.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 199aa    MW: 22114.9 Da    PI: 6.2844
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016491288.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.2e-191767155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr ++ +g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a++++++
  XP_016491288.1 17 PVYRGVRMRS-WGKWVSEIREPCK---KSRIWLGTYSTPEMAARAHDVAALSIKK 67
                    68*****998.**********854...5**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-121767IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-291876IPR001471AP2/ERF domain
SMARTSM003806.1E-321881IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-201876IPR016177DNA-binding domain
PROSITE profilePS5103222.011875IPR001471AP2/ERF domain
PRINTSPR003673.4E-101930IPR001471AP2/ERF domain
CDDcd000183.11E-291977No hitNo description
PRINTSPR003673.4E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MTKRKIKQSS NTGNRHPVYR GVRMRSWGKW VSEIREPCKK SRIWLGTYST PEMAARAHDV  60
AALSIKKNSS ILNFPHLVNS LPRPISLSPR DVQAAAAKAA SMEEPIISSI SSSNSSSSSD  120
LTLETITSAS DVELGEIIEL PSLEGSFDSD ESKTELRLSD SVDGWLYAPW WAPSDFGEYL  180
LEQDAVGESL ILRNFERQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-181179776Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776195.11e-143PREDICTED: dehydration-responsive element-binding protein 3-like
RefseqXP_016491288.11e-143PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD34e-57DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1S4BR671e-142A0A1S4BR67_TOBAC; dehydration-responsive element-binding protein 3-like
TrEMBLA0A1U7WPL51e-142A0A1U7WPL5_NICSY; dehydration-responsive element-binding protein 3-like
STRINGXP_009776195.11e-143(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-54ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]