PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016491280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 292aa MW: 32574.3 Da PI: 10.1616 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.4 | 1.5e-38 | 74 | 133 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e++lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+n+k+ XP_016491280.1 74 PETILKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKR 133 67899***************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-30 | 62 | 127 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.8E-32 | 77 | 132 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.376 | 78 | 132 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 80 | 116 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MAFSSIPIYL DPPNWQHEQG NHQRQPGVAN ESPSQLSPAM LPPPAVGGGG GGPAGSVRPG 60 SMVERARLTK VTQPETILKC PRCESTNTKF CYFNNYSLSQ PRHFCKTCRR YWTRGGALRN 120 VPVGGGCRRN NKRGTKRSRS KSPTRSEKRN CPIITSANAT TSTNSIPHLP HPTHLSFLST 180 TNLHNFSDFT STENSLNFGG SQPQDGTRDQ MDVQARFIDQ FRFQQMQQFP FFSTLEQQPS 240 NNLYQFEAAA EYHVGEVANV KVEVNKGTNS QGLNLPRNNL GVTNNQFWTN FH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772448.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.6-like | ||||
Refseq | XP_016491280.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.6-like | ||||
TrEMBL | A0A1S4BQX0 | 0.0 | A0A1S4BQX0_TOBAC; dof zinc finger protein DOF3.6-like | ||||
TrEMBL | A0A1U7W1E6 | 0.0 | A0A1U7W1E6_NICSY; dof zinc finger protein DOF3.6-like | ||||
STRING | XP_009772448.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 3e-40 | OBF-binding protein 3 |