PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016491222.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 231aa    MW: 23974.4 Da    PI: 5.8078
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016491222.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.24.3e-392583361
          zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     ++l+cprCdstntkfCyynny+lsqPr+fCk+CrryWt+GG+lrn+PvGgg+rkn ++
  XP_016491222.1 25 PENLPCPRCDSTNTKFCYYNNYNLSQPRHFCKSCRRYWTRGGTLRNIPVGGGTRKNSSH 83
                    57899**************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-252482IPR003851Zinc finger, Dof-type
PfamPF027013.0E-332782IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4882882IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103066IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSSEVGDRRP ARLPAPANET RPSEPENLPC PRCDSTNTKF CYYNNYNLSQ PRHFCKSCRR  60
YWTRGGTLRN IPVGGGTRKN SSHKRPRNTT SVTAQESVNA TPITMIGSGQ SSGSGSVSFM  120
GCEVNLNESV QEAGGATNGT FTSLLTGPVG GGFVPLGGFG LGLGGFGLGN LDWPMEQVGG  180
GNGGGGDGGE TMKWQLSSGE IEGGGGEGIS DDDCFGNWPD LAISAPGTSL K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9145247e-34CU914524.3 S.lycopersicum DNA sequence from clone LE_HBa-107D6 on chromosome 4, complete sequence.
GenBankHG9755167e-34HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788291.11e-167PREDICTED: dof zinc finger protein DOF3.4-like
RefseqXP_016491222.11e-167PREDICTED: dof zinc finger protein DOF3.4-like
TrEMBLA0A1S4BQQ51e-165A0A1S4BQQ5_TOBAC; dof zinc finger protein DOF3.4-like
TrEMBLA0A1U7XF581e-165A0A1U7XF58_NICSY; dof zinc finger protein DOF3.4-like
STRINGXP_009788291.11e-166(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.18e-34OBF binding protein 1