PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016491179.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 225aa MW: 26348.3 Da PI: 4.7034 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.6 | 1.1e-18 | 27 | 77 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +ft+eq++ Le++F+ + ++ +++ +LA+ lgL+ rqV +WFqN+Ra++k XP_016491179.1 27 RFTDEQVKLLESMFRLETKLEPRKKLQLARDLGLQPRQVAIWFQNKRARWK 77 7*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 116.9 | 1.1e-37 | 25 | 114 | 3 | 92 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +r+++eqvklLE++F+ e+kLep++K +lar+Lglqprqva+WFqn+RAR+k+kqlE++y +Lk+++d+l+ + ++L++e+e+L +l+ XP_016491179.1 25 GKRFTDEQVKLLESMFRLETKLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLENEYIVLKAKFDHLNMQFQSLKTEKEKLLIQLE 114 58***********************************************************************************98775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.09E-17 | 15 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.844 | 19 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.5E-15 | 21 | 83 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-19 | 26 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.8E-16 | 27 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.92E-13 | 27 | 80 | No hit | No description |
PRINTS | PR00031 | 1.6E-5 | 50 | 59 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 54 | 77 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.6E-5 | 59 | 75 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.2E-10 | 79 | 120 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
MEPEESQELE KSKSPNSLKK NTENGKRFTD EQVKLLESMF RLETKLEPRK KLQLARDLGL 60 QPRQVAIWFQ NKRARWKSKQ LENEYIVLKA KFDHLNMQFQ SLKTEKEKLL IQLEILNDQL 120 ENNLARGSRS EDLKDNEMYT SSENGGTDLE LKDSPGCSNA RFDHKRIKED QDDDTAEETD 180 KYFTPKEEAE FWNLEELGDN SLEQWCVGLG SSFNQSCGNS KLWDF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016491179.1 | 1e-163 | PREDICTED: homeobox-leucine zipper protein ATHB-7-like | ||||
TrEMBL | A0A1S4BQK9 | 1e-162 | A0A1S4BQK9_TOBAC; homeobox-leucine zipper protein ATHB-7-like | ||||
STRING | XP_009798092.1 | 1e-162 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46680.2 | 6e-35 | homeobox 7 |