PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016491140.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 707aa MW: 81410.3 Da PI: 7.8555

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016491140.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.7	1.5e-26	28	115	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +fY+eYAk++GF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk+++ +gkw+++++++eHnHel p XP_016491140.1 28 EFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRSsNGKWYIHSFVKEHNHELLP 115 6**************************************999877....9****************9**************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-24	28	115	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-22	228	320	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.336	508	544	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.9E-8	518	542	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.8E-7	519	546	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence Send to blast
MESTVAMGNS NVEPRDDMEF DSHDAAYEFY KEYAKSAGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRSSNGKW YIHSFVKEHN HELLPAQVHF 120 FRSHRNVDPL KNDAKVRRKK MLASVSKQYG AYQFSGNLEN LFRNQHDRGR SLTLEEGGAQ 180 VLLEFLVQMQ EENPKFFYSV DLNEEHRLRN VFWIDAKGMD NYSNFGDVVS FDTTYFTNKY 240 KIPLVLFIGA NHHVQPTLLG CALIADETVH TFIWLMRTWC LAMGGRGPRI LLSDQNDNIK 300 AAVGAIFPDT GHYFSLWSIL EKIPRRLEYL SLWHDAFMAK FTKCIYRSWT EEQFEHRWWK 360 LIEKFNLRED EWVQSLYENR KLWVPAFMRD VSFASLSTAS RSESMNSFFD KYIQSETSLR 420 DFIGQHKLIL EDWYEEEAKA NFDAWHEMPE LKSPSPFEKQ MLLIYTREIF KKFQVEVLGA 480 AACHLKKESE DGTSITYAVK DFDANQDFMV EWDALRSDIY CSCHSFEYKG YLCRHAIVVL 540 QMSGVFNIPS KYILQRWTNA AMSRHSISER MEDVQAKVRR YNDLCRRAII LGEEGSLTQE 600 SYNIAVGAIK EALKQCATVN VTCETNLRSG SCATLAIQGV NEVCQGNSLA ARELMPYSRA 660 AQTSKGSKRA DPGKERESID NASNKKGKVT LEPEIPNGAQ GVFHQMT

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence Send to blast

MESTVAMGNS NVEPRDDMEF DSHDAAYEFY KEYAKSAGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRSSNGKW YIHSFVKEHN HELLPAQVHF  120
FRSHRNVDPL KNDAKVRRKK MLASVSKQYG AYQFSGNLEN LFRNQHDRGR SLTLEEGGAQ  180
VLLEFLVQMQ EENPKFFYSV DLNEEHRLRN VFWIDAKGMD NYSNFGDVVS FDTTYFTNKY  240
KIPLVLFIGA NHHVQPTLLG CALIADETVH TFIWLMRTWC LAMGGRGPRI LLSDQNDNIK  300
AAVGAIFPDT GHYFSLWSIL EKIPRRLEYL SLWHDAFMAK FTKCIYRSWT EEQFEHRWWK  360
LIEKFNLRED EWVQSLYENR KLWVPAFMRD VSFASLSTAS RSESMNSFFD KYIQSETSLR  420
DFIGQHKLIL EDWYEEEAKA NFDAWHEMPE LKSPSPFEKQ MLLIYTREIF KKFQVEVLGA  480
AACHLKKESE DGTSITYAVK DFDANQDFMV EWDALRSDIY CSCHSFEYKG YLCRHAIVVL  540
QMSGVFNIPS KYILQRWTNA AMSRHSISER MEDVQAKVRR YNDLCRRAII LGEEGSLTQE  600
SYNIAVGAIK EALKQCATVN VTCETNLRSG SCATLAIQGV NEVCQGNSLA ARELMPYSRA  660
AQTSKGSKRA DPGKERESID NASNKKGKVT LEPEIPNGAQ GVFHQMT

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016491140.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4-like isoform X6
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A1S4BQI2	0.0	A0A1S4BQI2_TOBAC; protein FAR1-RELATED SEQUENCE 4-like isoform X6
STRING	XP_009600660.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]