PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016491014.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 755aa MW: 82847.6 Da PI: 5.878

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016491014.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	332.3	9e-102	393	754	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +++L+++Ae v++g+ laq +Larl+++ sp g+p+ R+a+y +eAL+ l+ ++++l + ps++ + n + ++ a+k fse+sP+ +f+++ XP_016491014.1 393 IDQLFKAAELVQTGNPVLAQGILARLNHQLSPIGKPFYRAAFYCKEALQLLLHTNTNNLNNPSIPSSS-PFNLIFKIGAYKSFSEISPVAQFANF 486 689*************************************************88888876655555.478******************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 t+Nqa+le ++g er+Hi+Dfdi++G QW++L+q+La R++g+p+l+iT+++sp+++++ el t+e L +fA+e++++fef++l ++l++ XP_016491014.1 487 TCNQALLEVLDGFERIHIVDFDIGYGRQWASLMQELALRSGGAPTLKITALASPSTHDQLELGLTRESLIHFANEINMEFEFEILSIDSLNST-S 580 ********************************************************************************977766665.4 PP GRAS 192 eeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++L v+++Ea+aVnl ++ + ++sl+ vL++vk+lsP++vv v++ +d+++ +F +++++ l+ ys l++sl+a + ++ +k XP_016491014.1 581 WSLppLVSENEAIAVNLPISSLASY--QLSLPL----VLRFVKQLSPRIVVSVDKGCDRTDLPFPNHVIQILQSYSNLLESLDAV-NVNFDALQK 668 555334788******766666..566655....*****************************************665.3466999 PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Er+ll+++i+ +v+ + ++ e+ ++Wr+ + ++G++p+p+s+++++qa++++++++++g++ve+++ slvl+W++++L+s+SaWr XP_016491014.1 669 IERFLLQPRIERIVMSRFRS----PEKTQHWRALFLSSGLSPLPFSNFTESQAECVVKRTPVRGFHVEKRQSSLVLCWQRKELISASAWR 754 ************998887....9**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.626	366	734	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-99	393	754	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0048768	Biological Process	root hair cell tip growth
GO:0051301	Biological Process	cell division

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence Send to blast
MKGMPLPFDF EGKGVLDLDV VLNKNSILNS WNYNSKESCY LVNSPSAVLD IIRSPRPVTS 60 SSTLSSSLGG GGGGGGGTAS TDTAGAVSAN PSSKWQQQQQ QQDNTTATSS NVGGAAAESE 120 FQQVAAASAA ATEGKKCAME EWEGGLSESV MASPCQEQSI LGWIMGDVDD PSMSNLNKVL 180 QVSGPMDYEF NAGFGVVDQG FGVDQIGTSS FMPAINNSSV SSFPPTSTRM NNDKIGLFSN 240 IPTNLSQNPI FPSFSNNLGP VSFSQTQQQP FESTDLKPQS FHSHFLINQH QTQIPQNPSF 300 LLPLPFAQQE QNLVLPPKAK RHNPGTLEQQ GSQISQELFI DAGQQQPTPS HQLQLLPHFR 360 PGVPIGTKPK MVGEEMGQFH QLQLQQQQQQ AIIDQLFKAA ELVQTGNPVL AQGILARLNH 420 QLSPIGKPFY RAAFYCKEAL QLLLHTNTNN LNNPSIPSSS PFNLIFKIGA YKSFSEISPV 480 AQFANFTCNQ ALLEVLDGFE RIHIVDFDIG YGRQWASLMQ ELALRSGGAP TLKITALASP 540 STHDQLELGL TRESLIHFAN EINMEFEFEI LSIDSLNSTS WSLPPLVSEN EAIAVNLPIS 600 SLASYQLSLP LVLRFVKQLS PRIVVSVDKG CDRTDLPFPN HVIQILQSYS NLLESLDAVN 660 VNFDALQKIE RFLLQPRIER IVMSRFRSPE KTQHWRALFL SSGLSPLPFS NFTESQAECV 720 VKRTPVRGFH VEKRQSSLVL CWQRKELISA SAWRC

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence Send to blast

MKGMPLPFDF EGKGVLDLDV VLNKNSILNS WNYNSKESCY LVNSPSAVLD IIRSPRPVTS  60
SSTLSSSLGG GGGGGGGTAS TDTAGAVSAN PSSKWQQQQQ QQDNTTATSS NVGGAAAESE  120
FQQVAAASAA ATEGKKCAME EWEGGLSESV MASPCQEQSI LGWIMGDVDD PSMSNLNKVL  180
QVSGPMDYEF NAGFGVVDQG FGVDQIGTSS FMPAINNSSV SSFPPTSTRM NNDKIGLFSN  240
IPTNLSQNPI FPSFSNNLGP VSFSQTQQQP FESTDLKPQS FHSHFLINQH QTQIPQNPSF  300
LLPLPFAQQE QNLVLPPKAK RHNPGTLEQQ GSQISQELFI DAGQQQPTPS HQLQLLPHFR  360
PGVPIGTKPK MVGEEMGQFH QLQLQQQQQQ AIIDQLFKAA ELVQTGNPVL AQGILARLNH  420
QLSPIGKPFY RAAFYCKEAL QLLLHTNTNN LNNPSIPSSS PFNLIFKIGA YKSFSEISPV  480
AQFANFTCNQ ALLEVLDGFE RIHIVDFDIG YGRQWASLMQ ELALRSGGAP TLKITALASP  540
STHDQLELGL TRESLIHFAN EINMEFEFEI LSIDSLNSTS WSLPPLVSEN EAIAVNLPIS  600
SLASYQLSLP LVLRFVKQLS PRIVVSVDKG CDRTDLPFPN HVIQILQSYS NLLESLDAVN  660
VNFDALQKIE RFLLQPRIER IVMSRFRSPE KTQHWRALFL SSGLSPLPFS NFTESQAECV  720
VKRTPVRGFH VEKRQSSLVL CWQRKELISA SAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	9e-36	392	754	4	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016491014.1	0.0	PREDICTED: scarecrow-like protein 22
TrEMBL	A0A1S4BQ47	0.0	A0A1S4BQ47_TOBAC; scarecrow-like protein 22
STRING	XP_009762628.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6253	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-133	GRAS family protein