PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016490907.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 221aa MW: 25794.7 Da PI: 4.5504 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 24 | 74 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +ft+eq++ Le +F+ + ++ +++ eLA+ lgL+ rqV +WFqNrRa++k XP_016490907.1 24 RFTDEQVKLLEFMFKLETKLEPRKKLELARDLGLQPRQVAIWFQNRRARWK 74 7*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.8 | 6e-38 | 23 | 112 | 4 | 93 |
HD-ZIP_I/II 4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +r+++eqvklLE +F+ e+kLep++K elar+Lglqprqva+WFqnrRAR+k+kq+E++y++Lk+++d l+ + e+L++e+e+L ++l+e XP_016490907.1 23 KRFTDEQVKLLEFMFKLETKLEPRKKLELARDLGLQPRQVAIWFQNRRARWKSKQMEHEYRVLKAEFDGLNMQFESLKQEKESLLKQLEE 112 8************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.67E-18 | 11 | 77 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.3E-19 | 14 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.232 | 16 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-15 | 18 | 80 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.9E-16 | 24 | 74 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.78E-14 | 24 | 77 | No hit | No description |
PRINTS | PR00031 | 3.6E-6 | 47 | 56 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 51 | 74 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.6E-6 | 56 | 72 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.6E-13 | 76 | 117 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MEAEDTLTQG NTEPSNKKSK DGKRFTDEQV KLLEFMFKLE TKLEPRKKLE LARDLGLQPR 60 QVAIWFQNRR ARWKSKQMEH EYRVLKAEFD GLNMQFESLK QEKESLLKQL EELNDQLENN 120 HAGCSRSQDS LDSEIYTSSE NGGTDLELKD NIIPGCLNAS LEDKRVEEVE NDREGTLIEH 180 FRWKEEPEFW NMEELGDSSL GSPGRWCAVG LGRTFDLSWE F |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 68 | 76 | RRARWKSKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00650 | PBM | Transfer from LOC_Os09g35910 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009601707.1 | 1e-161 | PREDICTED: homeobox-leucine zipper protein ATHB-7-like | ||||
Refseq | XP_016490907.1 | 1e-161 | PREDICTED: homeobox-leucine zipper protein ATHB-7-like | ||||
Swissprot | P46897 | 2e-39 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A1S4BPU4 | 1e-159 | A0A1S4BPU4_TOBAC; homeobox-leucine zipper protein ATHB-7-like | ||||
STRING | XP_009601707.1 | 1e-160 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 2e-35 | homeobox 7 |
Publications ? help Back to Top | |||
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