PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016490863.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 387aa MW: 43431.1 Da PI: 6.7169 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.5 | 3.8e-30 | 201 | 260 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ XP_016490863.1 201 MNDGCHWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCVEDMSILITTYEGTHNHP 260 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.7E-32 | 186 | 262 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-27 | 195 | 262 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.207 | 196 | 262 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-36 | 201 | 261 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.2E-27 | 202 | 260 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MDNSRKFGSD EKIETIDLSL KLDHEELSNE VNSSRELSQF DAKIQSKEKE FGKNSKREEY 60 QFSVLQKEMN MMKEENKVLR EAVEQTMKDY YDLQKKFSNT QQNNGKKRTD SPASQENDIG 120 DGELGLSLTL LSSGSNASKV EADEERKEKQ EDATTTGYLP IQSSNNSHGS NFGGITSQVM 180 NSPPNRKARV SIRAKCEAAT MNDGCHWRKY GQKIAKGNPC PRAYYRCTVA PGCPVRKQVQ 240 RCVEDMSILI TTYEGTHNHP LPVAMASTAG SFTLVDSSIN PLLSNGTSNL LNQTFFPSPY 300 HIINSSSSPY TSNLRNNLYN HEQYPIVNSF SNTSLSEAAQ LGNSWFPKPS NYERNTIGNN 360 IFTAYKLADI IHNEMGPQFE GNNNNYM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-22 | 188 | 262 | 1 | 74 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016490863.1 | 0.0 | PREDICTED: probable WRKY transcription factor 9 isoform X3 | ||||
Swissprot | Q9C9F0 | 2e-65 | WRKY9_ARATH; Probable WRKY transcription factor 9 | ||||
TrEMBL | A0A1S4BPX6 | 0.0 | A0A1S4BPX6_TOBAC; probable WRKY transcription factor 9 isoform X3 | ||||
STRING | XP_009606133.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 5e-64 | WRKY DNA-binding protein 9 |