PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490845.1
Common NameNAP1-2
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 28216.1 Da    PI: 8.2138
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490845.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.54.1e-291059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rienk+nrqvtfskRr g+ KKA+E+SvLCdaeva+i+fs++gk++eyss
  XP_016490845.1 10 RIENKINRQVTFSKRRGGLVKKAHEISVLCDAEVALIVFSHKGKIFEYSS 59
                    8***********************************************96 PP
2K-box106.92.4e-35841768100
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + e++ +e+++ e+akLk++i+ Lqr+++h++GedL+sL+lk+Lq+LeqqL++slk iRs+Kn+l++e+i+ lqkkek++qeen++L+kk++e
  XP_016490845.1  84 NSESSVQENWSLEYAKLKAKIDLLQRNHKHYMGEDLDSLNLKDLQNLEQQLDTSLKLIRSRKNQLMHESISMLQKKEKAIQEENNMLSKKIKE 176
                     35677899**********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.931161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-34288IPR002100Transcription factor, MADS-box
CDDcd002656.87E-41275No hitNo description
PRINTSPR004041.5E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-303859IPR002100Transcription factor, MADS-box
PfamPF014866.7E-3184174IPR002487Transcription factor, K-box
PROSITE profilePS5129717.81790180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRGKVQLRR IENKINRQVT FSKRRGGLVK KAHEISVLCD AEVALIVFSH KGKIFEYSSD  60
SCMEQILERY ERYSYTERRL LASNSESSVQ ENWSLEYAKL KAKIDLLQRN HKHYMGEDLD  120
SLNLKDLQNL EQQLDTSLKL IRSRKNQLMH ESISMLQKKE KAIQEENNML SKKIKEKDNT  180
VGQQVEWHQQ NQVPTSTSFL LQPHPCLNIG GNYQEEAEEA RRNELDLNLD SLYPCHMGCF  240
AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-21174173MEF2 CHIMERA
6byy_B2e-21174173MEF2 CHIMERA
6byy_C2e-21174173MEF2 CHIMERA
6byy_D2e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0091270.0AF009127.1 Nicotiana tabacum NAP1-2 (NAP1-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312788.11e-180truncated transcription factor CAULIFLOWER A-like
RefseqXP_016490845.11e-180PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S71e-129AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLQ9ZTY21e-179Q9ZTY2_TOBAC; NAP1-2
STRINGXP_009778843.11e-178(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.19e-98MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]