PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490803.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 243aa    MW: 27183.3 Da    PI: 5.4427
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490803.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.73.2e-06183227454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     + n  E++RR ++++    L+ ++P a      +++ +++L +Av+Y+ksL
  XP_016490803.1 183 TSNCSEKKRR-KLKKMVKALKGIVPGA-----SRMNTVTVLDEAVRYLKSL 227
                     5689999998.7**************9.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.88178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-9182237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.80E-9182232No hitNo description
Gene3DG3DSA:4.10.280.101.5E-8183238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-7185233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MQSNYPFSPQ KPFFSPEDQA GGGNLFDIPS PSVFGTMALP TGFNPSVPVH GFEFQSSEAC  60
PKNFIIFDRT DYRSQIMFHP AMASKFPYPD LNFNATYFQD GMERKVAKNE NTEVSSYLKE  120
DSADINALLS FEEEEHEEYD DEEVSTARTD ANYGNSSPES YSNYDCQSKK SRTSSLGKSS  180
GSTSNCSEKK RRKLKKMVKA LKGIVPGASR MNTVTVLDEA VRYLKSLKVE VQKLGIENLK  240
TFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188192KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595499.10.0PREDICTED: transcription factor bHLH144
RefseqXP_009595500.10.0PREDICTED: transcription factor bHLH144
RefseqXP_009595501.10.0PREDICTED: transcription factor bHLH144
RefseqXP_016490801.10.0PREDICTED: transcription factor bHLH144-like
RefseqXP_016490802.10.0PREDICTED: transcription factor bHLH144-like
RefseqXP_016490803.10.0PREDICTED: transcription factor bHLH144-like
RefseqXP_018624851.10.0PREDICTED: transcription factor bHLH144
TrEMBLA0A1S4BPI81e-180A0A1S4BPI8_TOBAC; transcription factor bHLH144-like
STRINGXP_009595499.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.22e-29bHLH family protein