PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016490748.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 281aa MW: 32252 Da PI: 5.444

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016490748.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.2	4.4e-55	7	133	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL kkv++ ++++ +++++vd++++ePwdLp k++ +e+ewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ XP_016490748.1 7 LPPGFRFHPTDEELITCYLSKKVSDFRFTA-TAFSDVDLNNCEPWDLPGKASMGEEEWYFFSLRDRKYPTGFRTNRATEAGYWKTTGKDKEIFQ- 99 79***********************999.88***********9889999***********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +g ++g+kktLvfy+grapkgekt+W+mheyrle XP_016490748.1 100 GGVVIGMKKTLVFYRGRAPKGEKTNWIMHEYRLE 133 ******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-64	4	153	IPR003441	NAC domain
PROSITE profile	PS51005	59.495	7	153	IPR003441	NAC domain
Pfam	PF02365	1.6E-28	8	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MEEINNLPPG FRFHPTDEEL ITCYLSKKVS DFRFTATAFS DVDLNNCEPW DLPGKASMGE 60 EEWYFFSLRD RKYPTGFRTN RATEAGYWKT TGKDKEIFQG GVVIGMKKTL VFYRGRAPKG 120 EKTNWIMHEY RLETNLAFKP SKEEWVVCRV FQKRSTMKKA QPTSSSQQSL ESPNCDTNCT 180 IAKEIIGDFE LPNLISIDTP SNYGINKISL HNYNNENMNM NFSAATRSEG ASNINVPFLP 240 NWSNLSSSVN SLFENDFTLN HSVQQQQAQD QSYWTIIFGE D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-56	6	159	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-56	6	159	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-56	6	159	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-56	6	159	16	171	NO APICAL MERISTEM PROTEIN
4dul_A	4e-56	6	159	16	171	NAC domain-containing protein 19
4dul_B	4e-56	6	159	16	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016490748.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FK44	1e-81	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A1S4BPI5	0.0	A0A1S4BPI5_TOBAC; NAC domain-containing protein 100-like
STRING	XP_009767002.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-95	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]