PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016490738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 839aa MW: 93886.4 Da PI: 10.0051 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.3 | 4.7e-12 | 27 | 116 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk+ + ++++rl++p +fa+ + ++ + + le +sg++Wev++ ++g++ l+ GW++F + + g f++F ++ rs f +v+ XP_016490738.1 27 FFKII--LSQHERSRLRIPEDFASIYCKNMLN--PVYLEVPSGEVWEVEV--VHSQGQICLGIGWQDFSDFYSISRGHFLMFGYNARSHF--NVS 113 67777..78889999********877444334..4***************..999999**************************999999..999 PP EE- CS B3 96 vfr 98 +f+ XP_016490738.1 114 IFD 116 997 PP | |||||||
2 | B3 | 50.9 | 2.8e-16 | 282 | 374 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + ps+v++ l++ kfa+++ +++ ++ l++ + sW+vk+ + ++ +GWk Fv +n+Lk gD++vF++++ ++ v++fr XP_016490738.1 282 FMQPSYVFSPFSLSIALKFARKYFLENYGNLVLRVPGRGRGSWSVKC--TTRGTNAKVHSGWKAFVLDNKLKCGDVCVFEVIKGTRLFIDVTIFR 374 5789*******************88888887888888888*******..66666677899********************987655556677766 PP | |||||||
3 | B3 | 36.8 | 6.8e-12 | 540 | 632 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 + ps+v+k l ++ fa ++ ++ ++ l++ + + sW vk+ k++ ++ ++ Wk Fv +n+Lk gD +vF+l++ ++ l v++fr XP_016490738.1 540 MQPSYVSKPYSLHISLLFAVKYFRENCGNLVLRVPGSGSGSWPVKYALGKSKPKICFS--WKAFVLDNKLKFGDACVFELIKGgTKPILDVTIFR 632 67899999999***********65544544555555666*******988888888888..********************976566667777776 PP | |||||||
4 | B3 | 54 | 3.1e-17 | 739 | 829 | 3 | 95 |
EE-..-HHHHT....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 3 kvltpsdvlks....grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 + ++++++ +s +l++ + a+++ k++ +++l+++s rsW vk+ + + lt+GWkeFv +n+Lk+gD++vF++++rs+ + XP_016490738.1 739 TCFMQPSYVSSasgpMQLSITLSRARKFFAAKHS--DVVLQNSSKRSWAVKC--SLGTVNAKLTSGWKEFVLDNNLKVGDVCVFERVSRSKL--L 827 5555444444446668899999999999755444..8***************..55555677***********************7766555..4 PP EE CS B3 94 vk 95 + XP_016490738.1 828 FN 829 44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.3E-18 | 19 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-17 | 21 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.28E-10 | 25 | 116 | No hit | No description |
PROSITE profile | PS50863 | 11.279 | 25 | 118 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-8 | 27 | 116 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.2E-9 | 28 | 118 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-21 | 271 | 376 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-19 | 272 | 375 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.88E-17 | 277 | 374 | No hit | No description |
SMART | SM01019 | 5.2E-12 | 278 | 376 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.561 | 279 | 376 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-13 | 282 | 374 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-16 | 528 | 633 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.22E-16 | 529 | 632 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.3E-11 | 535 | 634 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.644 | 536 | 634 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-9 | 540 | 632 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.85E-15 | 540 | 632 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.5E-23 | 730 | 833 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.58E-20 | 733 | 834 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.47E-15 | 736 | 833 | No hit | No description |
SMART | SM01019 | 7.4E-10 | 741 | 831 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.084 | 741 | 836 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-15 | 748 | 828 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 839 aa Download sequence Send to blast |
MAAKPHLQSG ESSSNWKSST NITQPKFFKI ILSQHERSRL RIPEDFASIY CKNMLNPVYL 60 EVPSGEVWEV EVVHSQGQIC LGIGWQDFSD FYSISRGHFL MFGYNARSHF NVSIFDLSAS 120 EIEYPYSSAH GIHTPIFHCH ETRHAPKRDQ SESDDSVEIL EGIPRSQKAK AIIPDTIEHS 180 VENLGHCPLG QSSKRKRKEG DTENDVSVDM HIKRMEVEKS QENVASPSFT REGKKSNKGC 240 RMQKQQSESV YGPNKAVMDR KSAVAYQRAK AFKSKNPFMT SFMQPSYVFS PFSLSIALKF 300 ARKYFLENYG NLVLRVPGRG RGSWSVKCTT RGTNAKVHSG WKAFVLDNKL KCGDVCVFEV 360 IKGTRLFIDV TIFRAAGSTL MHKIIGEVPG DSDSKSNVFK TDNCVPCSQP KVVHTKKLKQ 420 RKGGSYEEHG EGTEIEHSVE ILGHCPLAHG SKRKRPEGEA EGNVSIDIHT KSINVENTQE 480 HVASPSITRK TKRSGESCRM HKQQSEVVYA KNKTVDKERS IAYQRAKAFT SENPFVIYFM 540 QPSYVSKPYS LHISLLFAVK YFRENCGNLV LRVPGSGSGS WPVKYALGKS KPKICFSWKA 600 FVLDNKLKFG DACVFELIKG GTKPILDVTI FRAAESKPMH KIDAKLAGVS DSKKKTIKTE 660 NSVPCSQPKI VHSRKLNFEK KQRGDSDCFT SKIKEEPSEA AGKHVQQSKS SCKGSAVAKE 720 MVLAYLRAKA FTSENPFFTC FMQPSYVSSA SGPMQLSITL SRARKFFAAK HSDVVLQNSS 780 KRSWAVKCSL GTVNAKLTSG WKEFVLDNNL KVGDVCVFER VSRSKLLFNV IIYTSAEGM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 7e-14 | 248 | 374 | 18 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 7e-14 | 248 | 374 | 18 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-44 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 1e-44 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016490738.1 | 0.0 | PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
TrEMBL | A0A1S4BPH5 | 0.0 | A0A1S4BPH5_TOBAC; putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
STRING | XP_009613660.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA759 | 18 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 6e-35 | B3 family protein |